Coregonus clupeaformis (lake whitefish): 121580842
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Entry
121580842 CDS
T08357
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 7 isoform X1
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121580842
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121580842
BRITE hierarchy
Motif
Pfam:
SNF2-rel_dom
Helicase_C
BRK
Chromo
ResIII
DEAD
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
121580842
NCBI-ProteinID:
XP_041751853
LinkDB
All DBs
Position
14:45339274..45433723
Genome browser
AA seq
3213 aa
AA seq
DB search
MADPGMLSLFGDDANLFSDGLEGLGDCGFPQGQPNPMGQQMPHEHQGYGSLSSNSLHHSS
QAGPGQPKMGHPYDPFTGYEQQQGQGRLLGNGPAVNGMATPHSRYHNNPQQPEGGHHVYP
RAQGDGQGQSFPDGGAVWGPQAGPGQGRPPFQQQQQQAAAQAPSHQQHGPSGPQGQGHQM
GPYMGRADYATMQGHPGQTQTPTRINHFPPGMGQEPNHYMGHVGLQQNPSMTGPPMRHPA
QQQQPPQQFLHRPGQGPVHPQDTMASHTSRQQQQGLAGRPHQNMGFNMHGQAASPSAVTS
SGPYPPYPQYGNLNQGLAVSAGMTPGMSLSSTSNNNSNASGPMGPAQVQRYPNAGGAPQR
YPGPQVHQQPVHPNQITGQPMHPSQPLHPSQAQATPQQQPHLPTPPQGSYGSPPSMSPMR
GMGTPAVTPPPQQVRPPSAGLAPEVGGYPGAPLQAPNPMAPPQRNPTPLGAQQPQHHPQH
LSHPQQHPHMPPSQQLYPGMSPNQRGPLDQVRPPGPMAHGEPPGPQDQRLLPPQQQAPRP
GLQPLPMAFQQQVHPVHAALPPSQAQTHLAGPQHQSSPPNQPPWAPAAHQSPPTPQKVPY
IQYSPSDPSSEMTASDKTPASGANFQPANRDKQPTEQKPKKKKKKKAKVIEEEEVAEGDK
KPKKKKKGGSIEEGDKEERKQKVGGSPWVEVDPLTGALEESLVVEKKTKKKPKEKEPKEP
MTPKTPKTPKTPKEPKEKKAKSTTPKAKTPKKPSSTKKVESAECSGSSVTETKRKREPSV
SFDVEKSPPAPSDEDDDSVQKRRSSRQVKRKRYTEELEFRISDDDGDASPFNNSEQQEVE
TEGPVVEKIMAIRMGKKVMESGEEMEVEEFYVKFKSFSYLHCRWADLEELEKDKRIHQKV
KRFRAKQALPTFVTEMDDEPFNPDYVEVDRVLDVSESTDENGEPVKLYLVKWCSLPYEDS
TWELKADIDQAKIDEYEAVAARQPETKRLERPPTEDWQKSESSRDYKNDNALREYQLEGV
NWLLFNWYNTRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFR
TWTNLNVIVYHGSQASRKTIQAYEMNYRDAQGRVIKGAYKFHAVITTFEMILTDCPELRS
VPWRCVVIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLNFLEPERF
PSENTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKK
YYRAILEKNFSFLSKGGPGGGGGAWGGGGAQVPNLLNTMMELRKCCNHPYLINGAEEKIL
EDFRENHHAEMPQFHLQAMIQAAGKLVLIDKLLPKLKAGGHRVLVFSQMVRCLDILEDYL
IQKRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS
DWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRE
NAANGVPQLSKKEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIESEGKG
STFAKASFVAAGNRTDISLEDPDFWQKWAKKAELDMEAINGRNTLVIDTPRVRKQTRHYS
SMKEDELAEFSELESDGENEKPLTKPRRPQDRAHGYPRSECFRVEKNLLVYGWGRWGDIL
SRGRFKRPLQEQDVETICRALLAYCLLHYRGDENIKSFIWDLITPSEDGQSRTLTNHSGL
STPVPRGRKGKKGKPAPPAPPQLPRAEWLASCNPDLLLQEDSYKRHLKHHCNKVLLRVRM
LYYLRQEVIGDHADRILEGTDSSEMDIWIPQPFHAEVPADWWDSEADKSLLIGVFKHGYE
KYNSMRADPALCFLERVGMPDAKAIAAEQRGADMMADGPEGEDEDPEYKPLRMPFKDEME
DFTNSPLEDKEEAVDVESGESKPGENVAGSRGACRLYWPAASVLTARLRRLITAYQRTHK
REQLRQEAMARPDGRRRRRPREQLFSLVTDGGGAYVQEDVACMAEGSPYMAKGGAFMPEA
TALLAEGGAFFKERRQRWTRREESDFYRVVSTFGVIYDTDRQRFDWTQFRAFARLDKKSD
ESLEKYYFSFVAMCKRVCRMQVKANTELPDPTLIIDPITEERASRTLYRIELLRRIREQV
LPHPLLGERLRLCQPSSDLPEWWDCGRHDRDLLLGASKHGVSRTDYHILNDPALGFLEAH
RKFTQGGSAGVPQPPRDGAPATASPSSTEQATATAGAEKSLPVKEEEGEEEGKEMKEEGD
DDIPCTKTEKPDEGKEEEMEAEKEDKAGSPKKVKEEEEKGEAKEKEEKMKVNGNADGETS
MEANADGETSMEANADGETSMEANADGETSMEANADGETSMEAKPEEYKAPTEETKDQYK
KLEFQEKPESPKASENQETKKEEREEKEGSPAKSPKSPKPVAEKGPEEEDEEKMEEDDKS
EKSSQAEAGATSEQKNFDEESNASLSTTARDETRDGFCPEDGEPSAIQALQERTTSSFWP
KDRVMINRMDNICDAVIKGKWPANRRQFFDFPGLLPGYPGPMVSESPTQRRSLAELSTAA
AAQTSFSGSEDLTHSPQVNEDALSILPKQRRRRRRKVEIEAERAAKRRNLMDMVAQLRES
HAAESQSQAMDLTKGIMHQHLKASASSLVSYSSSMVQAATPSRHRANGSLAEADLPTRRR
RGRRKNVEGLELLFMRGATEDSERTKASVEGVQMPPRSHRHNIPSTSTRVPSVSALEDGE
AGTPSNKDLRDWLRQHPTYTMDMPTAYTPKSEETLLSSQFPKPKQKRHRCRNPNKIDINT
LTGEERVPVVNRRNGRKMGGAMAPPMKELPRWLLENPDFAIAPDWTDIVKQSGFLPEAMF
DRLLTGPVVREEGVRRRGRRPKSEIAKATAAAAAAAQAASSGGLNPLLINGLFGGMDLTS
LQGLQSLQSLQLQLMGFPGMGGTDAKHASAMLPLMLPGMAGMAGMGGLPNMFGLGGLFGS
NLAAAASAAATPAAASNGTNDEGDSDETSKRDSREGGEARDEEKEDTGEEAESSEANGDA
AALNMAAAAMAASGMSANSLAFNPFLLSTMAPGLFSPYMFLPPGLGGLTLPGFPHTALAD
LQSAMAGTIGAASGAQGQEKEPSQVALDCPDAATADPETADDSDSAESLEKTAESSALED
EASALAEEAGSLEDLAAEEEEEGEDAPEEEKSD
NT seq
9642 nt
NT seq
+upstream
nt +downstream
nt
atggctgacccggggatgttgagcctgttcggggacgatgccaacctattctcggacggg
ctggagggcctgggagactgtggcttcccccagggccagcccaaccccatgggacagcag
atgccccatgagcaccagggctacgggtcgctctcctccaactccctccaccactcctcg
caggccggccctggacagcccaagatgggccacccctacgaccccttcacaggctatgag
cagcagcagggccagggtcggctgttgggcaatggccccgccgtcaacggaatggcgacc
ccgcactcacgctaccacaacaacccccaacaacccgaaggggggcaccacgtctacccc
agagcccaaggcgatgggcaagggcagtccttccctgatggcggagccgtgtggggcccc
caggctggccccgggcagggcaggcctccattccagcagcagcagcaacaggcagccgcc
caggccccctcccaccagcagcacggaccctctgggccccagggccaaggccaccagatg
ggcccctacatgggccgggccgactacgccactatgcagggccaccctggccagacccag
acgcccaccaggatcaaccacttccctccgggcatgggccaggagcccaaccactacatg
ggccacgtggggctccagcagaaccccagcatgacaggcccccccatgcgccacccggca
cagcaacagcagcccccccagcagttcctccaccgtcccggccagggccctgttcacccc
caggacaccatggcctcccacacctctcgccagcagcagcagggcttggccgggaggccc
caccagaacatggggttcaacatgcacggccaggcagcctctcctagtgctgtaaccagc
tcagggccgtaccccccctacccccagtacggcaaccttaatcagggattagccgtcagt
gcagggatgactcccggcatgagcctcagcagcaccagcaacaacaacagtaacgccagc
gggcccatggggccagcccaagtccagcgttaccccaatgcagggggggccccacagcgc
taccctggccctcaggtacaccagcagcctgtccaccccaaccaaatcaccggacagccc
atgcacccctctcaaccattgcacccctctcaggcccaggccaccccgcaacagcagccc
cacctccccacaccacctcagggatcttatggctctcccccctcaatgtcccccatgagg
ggtatgggaacccccgcggtcacacctccgcctcaacaggtccgcccccctagtgcaggc
cttgctccagaggtaggggggtaccccggagctccactccaggcccctaaccccatggcc
ccccctcagagaaaccccactcccctaggcgctcagcaaccgcaacaccatccccagcac
ctctcccacccacagcagcacccccacatgcccccgagccagcagctctacccgggcatg
tcccccaaccagagaggcccactcgaccaggtgagacctccaggtcctatggcccacggt
gagcctccaggaccacaggaccagcggctgctccctccccagcaacaggctcccagacct
gggctgcagcctcttcccatggccttccagcagcaggtgcacccagtccatgccgctttg
cccccgtcacaggctcagacacatctggccggcccccaacaccagagctccccgcccaac
cagccaccttgggcgccggcagcacaccagtcgcctccaaccccccagaaagtgccttac
atacagtattccccgtcagatccatcatctgagatgactgcttctgacaagacacccgcc
tcgggggcaaacttccagccagccaaccgtgacaagcagcccaccgagcagaaaccaaaa
aagaagaagaagaagaaagccaaggtgattgaggaggaggaagtagcagagggggataag
aagcccaaaaagaagaagaaaggtggaagtatagaggaaggtgacaaggaggagaggaaa
cagaaggtcgggggcagtccctgggtggaggttgaccctctgacaggcgccctggaagaa
tcgctggtggtggagaagaagacaaagaagaaaccaaaggagaaggagcctaaagagccc
atgacacccaagactccgaaaacacccaagacccccaaagagcccaaggagaagaaagcc
aagagcactacccccaaggccaagacgcccaagaagcccagcagcactaagaaggtggag
tcagcggagtgcagtggcagcagtgtgacagagaccaagaggaagagggagccctcggtc
agcttcgatgtggagaagtcacccccagccccctccgatgaggacgacgacagtgtccag
aagcgtcgttccagtcgtcaggtgaagaggaagcgctatacagaggaactggagttcagg
atctcggacgatgatggagacgcgtcccccttcaacaactctgaacagcaggaggtggag
acagaggggcctgtggtggagaagatcatggcaatacgcatggggaagaaggtgatggaa
tcgggagaggaaatggaagtggaagaattctatgtgaagttcaagagcttctcctacctg
cactgtcgctgggcagatctggaggaacttgagaaagacaaaaggatccaccagaaggtc
aagcggttcagggccaaacaggccctccccaccttcgtgacagagatggatgacgagcct
ttcaacccagactacgttgaggtggaccgggtactggacgtgtcagagagcacagatgag
aacggagagcctgtaaagctgtacctggtgaagtggtgctccctgccctatgaggatagc
acatgggagctgaaggccgacatcgaccaggccaagatcgatgagtacgaggccgtggca
gcccgccagcccgagaccaagcgtttggagcgacctcccaccgaagactggcagaaatcc
gagagttccagggattataaaaacgacaacgcactcagggaataccagctggagggagtg
aactggctgctcttcaactggtacaatacacggaactgcatcctagcagatgaaatgggc
ctgggcaagaccatccagtccatcacattcctttatgagatctacctgaagggcattcac
gggccctttctggtcatcgccccgctctccaccattccaaactgggagagggagttccgc
acgtggaccaatctcaacgtcatcgtctaccacggcagccaggccagccgcaagaccatc
caggcctacgaaatgaactaccgcgacgcgcagggccgtgtgataaagggagcgtacaaa
ttccatgcggtcatcaccacatttgagatgattctgacagactgcccggagctgcgcagc
gtcccatggcgctgtgtggtcatcgacgaggctcaccgcctcaagaacaggaactgcaaa
ctgctggagggactcaagatgatggacatggagcacaaggtgctgctgactgggaccccc
ctgcagaacacggtggaagagctcttcagtctgctcaacttcctggagccagaacgcttc
ccctcagagaacaccttcatgcaggagtttggagacctcaagactgaggagcaagtccag
aagctgcaggccatcctgaagcccatgatgctgcgacgtctcaaggaggacgtggagaag
aacctggcccccaaggaggagaccatcatcgaggtggagctgaccaacatccagaagaag
tactaccgggccatcctggagaagaacttctcctttctgtctaaaggaggaccgggagga
ggaggtggcgcatggggaggtggaggggctcaggtccccaaccttctcaacaccatgatg
gagctgaggaagtgctgcaaccacccctacctcatcaacggtgcagaggagaagatcctg
gaagacttccgtgagaaccaccatgccgagatgccccagttccacctacaggccatgatc
caggcggcgggcaagctggtgctgatcgacaagctgctgcccaagctgaaggccggggga
cacagggtcctcgtcttctcccagatggtgcgctgcctggacatcctggaggactacctc
atccagaaacggtacccgtacgagcgtatcgacggccgtgtgaggggtaacctccggcag
gctgcgattgaccgcttctctcgtccggactctgaccgctttgtcttcctgctgtgtacc
cgggctggaggcctgggcatcaacctgaccgctgctgacacctgcatcatctttgactcg
gactggaacccccagaatgacttacaggcgcaagccagatgccacaggattggccagagc
aaggctgtgaagatctacagactgatcaccaggaactcctacgagagggagatgtttgac
aaggccagcctcaagctgggccttgacaaggctgtgctgcagtccatgagtggccgagag
aacgcagccaacggggtgccacagctatctaagaaggaggtggaggacctcctacgtaaa
ggagcctacggagctttgatggacgaggaggacgagggctctaagttctgcgaagaggac
attgaccagatcctccagagacgaacccagaccatcaccattgagtccgagggcaagggg
tccaccttcgccaaggccagctttgtggccgctgggaacaggacggacatttccctggag
gacccggacttctggcagaagtgggccaagaaggcggagctcgacatggaagccatcaat
ggacggaacaccttggtgattgacactccgagggtgcggaagcagacacgccactacagc
tcgatgaaggaggacgaattggcagagttctctgagctggaaagtgacggtgagaacgag
aagcccttgaccaaacccaggcggccccaggaccgagcccacgggtacccccgtagcgag
tgcttcagggtggagaagaacctgctggtttatgggtggggtcgctggggagacatcctg
tcccgcgggcgtttcaagcggcccctgcaggagcaagacgtggagaccatctgccgagcc
ctgctggcctattgcctgctgcactaccgcggcgacgagaacatcaagagcttcatctgg
gacctcatcacgccctctgaggacggacagagtcgcacgctcaccaaccactccggtctg
tctactccagtaccacggggtcgtaaggggaaaaaggggaaaccagccccgcctgctcct
ccccagctccccagggcagagtggcttgccagctgtaaccctgacctgctactgcaggag
gacagctacaagagacacctcaaacaccactgtaacaaagttctcctgagggtccgtatg
ctctactatctgcgacaggaagtcatcggtgaccacgccgacaggatcctagagggaaca
gactcaagtgaaatggatatctggatccctcagcctttccacgctgaggtgcccgccgat
tggtgggacagcgaggcagacaaatcgctgctcatcggcgtcttcaaacacggctacgag
aagtataactctatgcgtgctgaccctgcgctgtgtttcctggagcgagtgggcatgccc
gacgccaaggccatcgctgcagagcagaggggggcggacatgatggcagatggtccggag
ggagaggatgaggacccagagtacaagcctctccgcatgccctttaaagatgagatggag
gacttcactaactcgcccctggaagacaaagaggaagctgtggacgttgagagtggtgaa
tctaaaccaggtgagaatgtagcaggcagcagaggggcgtgtcgtctgtactggccggcg
gcctcagtcctcaccgctagactccgccgcctcatcacggcctaccagcgcacgcacaag
agggagcagctccgccaggaggccatggcccggcccgacggccgccgccgccgccggccc
cgagaacaactcttctccctggtcaccgatggaggaggggcctacgtgcaggaggatgta
gcctgcatggcagagggaagtccttatatggccaagggcggagcttttatgcctgaggcg
acggcactcctggcggaaggaggggccttcttcaaagagaggcgtcagagatggaccagg
cgtgaggaatcagacttctaccgggtggtgtccacctttggcgtgatctatgacacggac
cgccagcgctttgactggacccagttcagggccttcgcccggctggacaagaagagtgac
gagagcctggagaaatactacttctccttcgtggccatgtgcaagcgggtgtgtcgcatg
caggtcaaagccaacacagagctcccagaccctaccctgataatcgaccccatcacggag
gagcgcgcctcgcgcaccctctatcgcatcgagctgttgcgccgcatccgcgagcaggtg
ctgccccaccccctgctgggcgagcgcctgcgcctctgccaacccagttcagacctgcct
gagtggtgggactgcggccggcacgaccgcgacctcctcctgggcgcctccaagcacggc
gtgagccgcactgactaccacatcctcaacgaccctgcgctgggcttcctggaggcccac
aggaagttcacccaggggggatcggctggggtgcctcagccgccccgtgatggagctccc
gccactgcttctccctcctccactgagcaggccacagctactgctggtgctgagaaatcc
ttacctgtcaaagaggaggaaggtgaggaagaagggaaggagatgaaagaggaaggtgac
gacgacattccatgtactaaaaccgagaaaccagacgaaggcaaggaggaagaaatggag
gcggagaaggaagataaggctgggtctcccaagaaggtgaaggaggaggaagagaaggga
gaggcgaaagagaaagaggagaaaatgaaggtcaacggcaatgctgacggagagacttcc
atggaggccaatgctgacggagagacttccatggaggccaatgctgacggagagacttcc
atggaggccaatgctgacggagagacttccatggaggccaatgctgacggagagacttcc
atggaggccaaacctgaggagtacaaagctcccactgaggagaccaaggaccagtacaaa
aagctagaattccaggagaaaccagagtctcctaaagcatcagaaaaccaggaaaccaag
aaggaagagcgagaggagaaagaaggaagcccagccaagtctcccaagtctcctaaacca
gtggctgagaaaggccccgaagaggaggatgaggagaagatggaggaagacgacaagtct
gagaagtcctctcaagctgaagcgggcgccacctcggagcagaagaactttgacgaggag
agcaacgcctcactgagcaccactgccagagacgagacccgcgatgggttctgccccgag
gacggagaaccctcagccatccaggccctccaggagagaaccacctcctccttctggcct
aaggaccgtgtgatgatcaatcgcatggacaacatctgtgatgcggtcatcaagggcaag
tggcccgccaaccgacgtcagttctttgatttcccaggcctgttgcctggataccccggc
cccatggtgtctgaaagccccacgcagaggcggagcctggctgaactgtcgacggcagcg
gccgctcagaccagcttcagcggcagcgaggacctcacccactcgccccaggttaatgag
gatgctctgagcatattgccgaagcagcgtcgtcgcaggcggaggaaggtggagatagag
gcagagcgtgcagccaagcgcaggaacctgatggatatggtggcccagctcagagagtct
cacgctgcagagtcccagagccaggccatggatcttaccaagggtattatgcaccagcac
ctcaaggcgtcagcgtcgtccctggtgagctactccagcagcatggtgcaggcggccacg
ccttccagacacagggccaacggctcattggccgaggctgacctgcccaccaggaggagg
cggggccgcaggaaaaatgtggaggggctggagctgctgttcatgagaggagccacggag
gattccgagaggaccaaagcttcagtggagggggtgcagatgcccccacgttcccaccgc
cacaacattcccagcacctccacccgtgtcccctctgtcagcgctttagaggacggggag
gctggtaccccctctaacaaagacctgagggactggctcagacagcaccccacatacacc
atggacatgcctactgcatacacaccaaagagtgaggagacgctcctctcctcccagttc
cccaaacccaagcaaaagagacaccgctgccggaacccaaacaagatcgacatcaacaca
ctcaccggagaagagagggttcccgtggtcaaccggagaaacggaagaaagatgggtgga
gccatggcccctcccatgaaggaactgcccagatggctcctggagaacccagattttgcc
attgctcctgactggactgacattgtcaagcaatcgggcttcctccctgaggccatgttc
gaccgtctcctgactgggcccgtggtgcgtgaagagggcgtccgtcgtcggggaagacgt
cccaaatcggagattgccaaggcaacagcggctgctgcggcagcagcccaggctgcatcc
tccggaggccttaaccccctgctgataaacggcctgtttggaggcatggacctcaccagc
ctgcagggcctacagagcctccagagtctgcagctgcagctcatgggcttccccggcatg
ggggggactgatgctaaacacgcctcggccatgctgcctctcatgctgcctggcatggct
ggcatggctggtatgggcggtctgcccaacatgtttggcctgggaggcctgttcggaagc
aacctggctgcagccgcctcagctgcagccacccctgctgcagcctccaacggcaccaac
gacgagggcgattcagacgagacgtcgaagagagactccagggagggtggagaagcgaga
gatgaggagaaagaggacactggggaggaggcagagtcgagcgaggctaatggggatgcc
gcggctctgaacatggctgctgccgctatggccgcctctggcatgtctgctaactccctg
gccttcaaccccttcctgctgtccaccatggccccggggctcttttccccctacatgttc
ctgccccctggcctgggaggtctcaccctgcctggcttcccccacactgccctggccgac
ctgcagagtgccatggctggaacaattggggccgcctctggagctcagggccaggagaaa
gagcccagccaggttgccctggactgccctgatgctgctaccgcagacccagagactgct
gatgacagtgactcagctgagagcctggagaagactgcagagtcgtctgcgctagaagac
gaggcctccgcattggccgaggaagccggctcgctggaggacctggcggccgaggaagag
gaggaaggagaggatgcccctgaggaagagaagagtgactga
DBGET
integrated database retrieval system
