Coregonus clupeaformis (lake whitefish): 121580868
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Entry
121580868 CDS
T08357
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04144
Endocytosis
cclu04520
Adherens junction
cclu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121580868
09144 Cellular community - eukaryotes
04520 Adherens junction
121580868
04530 Tight junction
121580868
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121580868
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121580868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Par3_HAL_N_term
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
121580868
NCBI-ProteinID:
XP_041751917
LinkDB
All DBs
Position
14:42572468..42871513
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AA seq
1407 aa
AA seq
DB search
MKVTVCFGRTRVVVPCGDGNIKVHTLIQQAVMRYKKAIAKDASYWLQVHRLEHGDGGILD
LDDVLCDVADDKDRLVAVYDEQDPHHGGDGTSASSTGTQSPDLFATELNTSSMSAFQPYQ
AASEIEVTPSALRTNMPLHVRRSSDPALATVNGPFSDPRVTLPPEESSRKNPTRWSTTAG
FLKPQHSVRGTGTDTNSLERKGKVVDTYRSLPRDAGSWANQREFQRETARSSLSANHPMV
DRWLERQDQEEEGHGEEENGRIAPVGRADSCMAHTPVRSLDLICSDIVKLVEVSNDGGPL
GIHVVPFSAQDRRTLGLLVKRLERGGKAEQQGLFQENDCIVRINNGDLRNIRFEQAQNMF
RQAMRSPVIMFHVVPNLMKAQYEQLSHNERNPNVAYSSGRFSPDSLASERGITTSGLDHT
PQRMSRGPHPHHHPHPEQGNAYTSLPHLHGGSMGKPPLGHAPPGRTPSPHRVLNSTPTAG
FTKKVGRRLNIQLKKGSEGLGFSITSRDVPIGGSAPIYVKNILPRGAAIQDGHLKAGDRL
LEVNGVDLVGLTQEEVVSLLRATPMGGAVGLVVLRQEEAFLPREVNAEPQMQSPRDLKVE
EDDLVLTPDGTREFLTFEIPLSDSGSAGLGVSVKGNRSKENHSDLGIFVKSIINGGAACK
DGRLRVNDQLIAVNGESLLGKTNQEAMETLRKSMSVEGNKRGMIQLIVARRVTKRNELEA
PGSLLGPEQALNSTLLDDRERRISHSLYGGIEGLDDNLMPQQTLMGRMMGNYQLSPTVNM
PQDDTVIIQDDRLPELPAHLSDQSSSSSHDDVGFHVEVPPPWAKEIQIQNESTLSPDDTD
PDGAFQREGFGRQSMSEKRTKQFGDASQLEIIKTRKSKSMDLVADEINLTPRKENTPGSS
TRDVGPSLGLKKSSSLESLQTAVAEVTLNGDMPFHRPRPRIIRGRGCNESFRAAIDKSYD
RPGATEEDDEDMETLEEDTEESSRSGRDSVSTVADLTPLPNTERPLVNGNHTNEDKKKDK
GGNDKKKQRDKEKDSKNKAKKGMLKGLGDMFRFGKHRKDGEKIERKGSSKWRPEELQASE
EETLRMRLEQERIQVKTRELRERQARERDYAEILDVNLNRDEEHPYAGIGPLDTSLDSRH
SRPQSPRDNDHHHQDSSLYTQVGKARNANGRPPSADSNRLAPSNHDRIQRLRHEFQQARG
DDDPDDRRRTYSFEQPWPNNTNTGPGPYQTDRQQTGRHSVSVEVQMQRQRQEARDAFQQA
QRQYSSLPRQPRKNPSSISQDSWDKVYPPGEGFQTTKENPRYSSYKGSRNGYPGVSSVNA
RVLLEAQELLRQEQRRREQEAKGKQLLLAPPQEHHGNNTYDSTASYSAHKDPVSPKGPYR
QDVPPSPSQLARLNRLQGPEKGRPFYS
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgacggtgtgttttggaaggactagggtggtggtaccgtgcggagatggaaat
atcaaagtccatactctcatccagcaagccgtcatgagatacaaaaaagccattgcaaag
gatgccagctactggttacaggtgcaccggttggaacatggggacggaggtatcctggac
ctggatgacgtgctgtgtgatgtggctgatgacaaagaccggctggtggcggtgtatgat
gaacaggaccctcaccatggtggcgacggcaccagcgccagctcaacgggcacacagagt
cccgacctgtttgccactgagctcaacacaagcagcatgtctgctttccagccctaccag
gccgccagcgagatagaagtcactccgtccgccctccgaaccaatatgcctctccatgtg
cgtcgcagcagtgatccagcactggcgacagtcaacgggccgttcagcgacccccgtgtg
accctgccgccagaggaatcgtccaggaagaaccccacccgctggtccaccacagctggc
ttcctcaaaccacaacactctgtcagaggcaccggcactgacaccaacagcctggagaga
aagggtaaagttgtggacacgtaccgtagtctcccccgtgacgcagggtcctgggcaaac
cagagagagttccagagagagacggcccgctcctccctgagcgccaaccacccgatggta
gaccgctggctggagagacaggatcaggaggaggaggggcatggggaggaggaaaacggc
aggatcgcgccggttggtcgagctgactcctgtatggcccacacccctgtgaggtcactg
gatctaatctgcagtgacattgtaaagctggtagaagtatccaatgacggcgggcccttg
gggatccatgtagtacctttcagtgcccaggaccgcaggactctcggcctgttggtcaag
cgcctggagaggggaggcaaggcggagcagcagggtctgttccaggagaacgactgcatc
gtgcgcattaataacggagacctgcgaaacatccgcttcgaacaagcccagaacatgttc
cgccaggccatgcgttccccggtcatcatgttccatgtggttcccaacctgatgaaggcc
cagtacgagcagctgtcacacaatgagaggaaccccaatgtggcctactcctctggacgc
ttcagtcccgactccctagccagcgagcgaggcatcaccacctcaggcctggaccacaca
ccacagaggatgtcccgtggtccccaccctcaccatcacccgcaccccgagcagggcaac
gcctacacctctctacctcacctccatgggggctccatgggcaagcccccattaggccac
gcccctccaggccgcaccccctcccctcacagggtgctaaactccacccccacggcaggc
ttcaccaaaaaggtcggcaggagactgaacatccagctcaaaaaaggttcggagggtctg
ggtttcagcataacatcgcgtgacgtccccatcggcggctcggcgcccatctacgtgaag
aacatcctgccccgaggagctgccatccaggacggacacctcaaggctggggacaggctg
ctggaggtgaatggagtggacctggttgggttgacccaggaggaggtggtctctctgctg
agggccacgcccatgggaggggctgtggggctggtggttttacgacaggaggaggccttc
ctgcccagagaagtgaatgcagaaccccagatgcaaagccccagagatttgaaggttgag
gaggatgacctggtgttgaccccggatggtaccagggagttcctgacctttgagatccct
ctgagtgactcagggtcggcagggttaggggtcagcgtcaagggcaaccgctccaaggag
aaccactctgacctgggcatctttgtcaagtccatcatcaacgggggagctgcctgcaag
gatggaaggctacgggtcaacgaccagctgatagcggtgaacggggagtcgttgctaggc
aagaccaaccaggaagccatggagacactaaggaagtccatgtcggtagagggcaacaag
cgggggatgattcagctgattgtggccaggagggtcactaaacgcaacgagctggaggcc
cctgggagcctcctgggaccggagcaggccctcaactccaccctgctggacgaccgggag
cgtcgtatctcccactccctgtacggaggcatagagggcctggacgacaacctgatgcca
cagcagaccctaatgggcagaatgatgggtaactaccagctctcccctacggtcaacatg
ccccaggacgacacagtcatcatccaagacgataggctgcctgaacttcctgcccacctc
tctgaccaatcgtcttccagctcccatgacgacgtggggttccacgtggaggtccctccc
ccctgggctaaagagattcaaattcagaatgagagcactctgagccctgatgacaccgac
ccagatggagcctttcagagggagggctttggcagacagagtatgtcagagaaacggaca
aagcagtttggagatgccagtcagctggagatcatcaagacacgcaagtccaagagcatg
gatctagtagccgacgagattaacctcacccctcgcaaagagaacacaccagggtcttcc
accagggacgtgggtccttccctaggcctcaagaagtccagctctctagagagtttacag
acagccgttgccgaggtaacactgaacggtgacatgcccttccacaggccacgcccacgc
atcatcagggggcggggctgcaacgagagcttccgggccgccatcgacaagtcatacgac
aggccaggcgctacagaggaggacgatgaggacatggagacattggaggaggacaccgag
gagagctctcggtccgggcgcgactctgtgtccaccgtggcagacctgaccccactaccc
aacacagagagaccgctggtcaatggcaaccacaccaatgaagacaagaagaaggataag
ggagggaatgataaaaagaaacagagggacaaagagaaggacagcaagaacaaggctaag
aaaggcatgctgaaaggcctgggagacatgttcaggtttggtaaacatcgcaaggacgga
gagaaaatagagcgtaaaggatcaagcaagtggaggccagaggagctacaagcctcagag
gaagaaacactgaggatgaggctggagcaggagaggatccaggttaagacccgggagctg
cgggagcggcaggcacgggagagggactacgctgagatcctggacgtcaacctgaaccga
gacgaggagcacccctacgccggaatcgggcccctggacacgtccctggacagcaggcac
agccgtccccagagcccccgagacaacgaccaccaccaccaagactcctccctctacaca
caagtcggcaaggcccgcaacgcaaacggacgccctccctccgccgacagcaacagacta
gcgcctagcaaccacgaccggatacagcggctgaggcacgagttccagcaggccagaggg
gacgatgacccagacgacaggagacgtacctatagcttcgagcagccctggccgaacaac
accaacacaggtccaggcccgtaccagacagacagacaacagacgggccgacactctgtg
tctgtagaggtgcagatgcagagacagaggcaggaagcgagagacgcctttcaacaggcg
cagagacagtacagctccctgccacgacaacccaggaagaacccaagctccatctctcag
gactcctgggacaaggtctacccgccgggcgagggcttccagacaaccaaggagaaccct
cgctactccagctacaagggctccaggaacggctacccgggggtgagcagcgtgaacgcc
cgcgtcttgctggaggcccaggagctgctgaggcaggagcagagacgcagggagcaggag
gccaaagggaagcagctactactagcgcccccacaggagcaccacgggaacaacacgtat
gattccactgcttcatactcggctcacaaggaccctgtgtcgcctaagggcccttataga
caggatgtacccccctcgccctcccagctggccaggctcaacaggctacaggggcccgag
aaggggaggcccttctactcctga
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integrated database retrieval system
