Coregonus clupeaformis (lake whitefish): 121580890
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Entry
121580890 CDS
T08357
Name
(RefSeq) deubiquitinating protein VCPIP1
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cclu01002
]
121580890
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121580890
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
121580890
Peptidases and inhibitors [BR:
cclu01002
]
Cysteine peptidases
Family C64
121580890
Ubiquitin system [BR:
cclu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
121580890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
ubiquitin
FDF
Motif
Other DBs
NCBI-GeneID:
121580890
NCBI-ProteinID:
XP_041751975
LinkDB
All DBs
Position
14:complement(40940836..40948283)
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AA seq
1194 aa
AA seq
DB search
MSLLQGSKKKDKRILSGTCPDPKCQARLFFPAYGSISIECTECGQRHEQNNLLNVEEVTD
PDVVLHNLLRNALLGVTGAPKKGTELVKVMGLSNYHCKLLSPILTRYGMDKQTGKAKLLR
EMNQGEMFDCSLLGDRAFLIEHEHVSTVGYGKDRSGSLIYLHDTLEEIKKANSNKECLIP
VHVDGDGHCLVHAVSRALVGRELFWHALRENLKQNFKQNLDRYKALFQDFIDAAEWEDII
NECDPLFIPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLVPEE
QCKGKDGKFNKPICIAWSSSGRNHYIPLVGIKNTVLPKLPPKLLPKAWGVPQELIKKYIK
LEQDGSCVIAGDRRLQDKYVMRLVNAMEEIFMEKHGIHPSLVADVHQYVYRRTGMIGVQP
EEVTEAAKKSVMENRLHRCLICNALSELHVLPEWLAPGGKLYNLAKSTHGQLRPDKNYSF
PLNNVVCSYDPEKDILIPDYKLSTLNTCNWCHGTSVRHIHGNGSVVYLDGDRTNTRSQGG
KCGCGFKHYWEGKEYDNLPEAFPITLEWGGRVVRETVYWFQYEVEVTLNSNVYDVAMKLV
TKHFPGEFGSELLVQKVVNTILHHTAKKNPDEYNPVSIDGAHAQRLTDVVETQQAVDTQP
PTKIILTGQKSKTIHKEELTMSKAERSLQQSISEQALVTQKRRTDRLKQEQKGVQGHGRP
SSPSAAQEPSSSAPATPTKSSFTPTASKEKKIRVTTSDGRQAMLTLQAQTTFSELQRSIA
NEFIVPPAQQCIRHGFPPKELLPPKDGEENEPVALQHGDRVTVEILRGPEDHKVSAPSAS
SSHSSLHSLHSVKSDDPVTSSRMNTSRELQDNIDLEMSSLCLLATLMGEDVWSYAKKLPH
LFQQGGVFYNIVKKDMGLMDGKHCTLPHLTGKTFVYNAAEECLELCVDAAGHFPVGPDVE
DLVKEALVQLRSEAASRSREGSPSHSLLRLGSGGVVRKKEQLQSVNAFQGKGHSLGTAPG
GSPPEHKPITRQHSSGVDLSASVSKGPDLSDISEDATKELVRMAPGFVTMKDSRHLDPSM
IEEQRKKLQEMVSSIQASMDRHLREQSNAGAGTGGPAERTSGAKMNASQSAPGVGDQEAS
SMDVSTAGAHGTPHGTPVKAGNKPDGKDAASEELEEMDSQDAEHSNALEPMDHS
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgctacaaggctccaagaaaaaggacaagcgtattttgtccggtacctgccca
gacccgaaatgccaggcgaggctattcttccctgcttacggctcgatcagcattgaatgc
actgagtgtggccaacgccacgaacagaataatcttttaaatgtggaagaagtaactgat
ccagacgttgtactgcacaatttattaagaaatgccctactcggtgtcactggggcccca
aagaagggaaccgagctggtgaaagtgatggggctttccaactaccattgcaagctcctc
tctcctattctcacaaggtatggaatggataagcagacgggaaaagcgaaacttctgagg
gaaatgaatcaaggagagatgttcgactgctcacttctaggtgatcgggcgtttctaatc
gaacatgagcatgtatctacagttggctatggcaaggacagatccgggagcctgatatac
cttcacgacactttggaggagattaagaaagctaacagcaacaaagaatgcctaattcct
gttcatgtggatggagatggacattgccttgttcatgctgtgtccagggccctggtaggc
agagaactgttctggcatgccttgagagagaatttgaaacagaatttcaagcaaaatctg
gatcgctacaaggcactctttcaggattttattgatgcagccgaatgggaggacatcatc
aacgaatgtgaccccctttttatcccaccggagggtgtgccactgggacttcgaaacatt
cacatatttggcttggccaatgtgctgcaccgccccataatcttgttagattcactgagt
ggaatgaggagctctggggattactctgcaacttttctcccagggcttgtaccggaagag
cagtgcaaggggaaagatgggaagttcaacaagcctatatgcatcgcctggagtagctca
gggcgtaaccactacatccctctagtcggaataaaaaacaccgtcctccccaagctgccg
ccgaagcttctccccaaagcatggggggtcccacaggagctcatcaagaagtacattaag
ctggagcaagatgggagctgtgtcatcgcgggagacaggcgcttacaagacaagtatgtg
atgagactggtcaatgccatggaggagatcttcatggagaagcatggcatccacccctcc
ctggtggcagacgtgcatcagtacgtttacagacggaccggtatgatcggcgtccaaccc
gaagaggtgactgaggctgccaagaaatcagtcatggaaaaccggctacatcgctgtctg
atctgcaatgcactctctgagcttcatgtgctacctgagtggctggctccaggtggtaag
ctctacaacctggctaaatccacccatgggcagctcagacccgacaagaactacagcttt
ccattaaacaatgtggtctgctcttacgaccctgagaaggacatcctcattcctgactac
aaactgagcacattgaacacctgcaactggtgccacggcacctcagtgcgtcacatccat
ggcaatggctctgtggtgtacctggatggagacagaaccaacacccgctcccaggggggg
aagtgcggctgcggcttcaagcactactgggagggaaaggagtacgacaatctgccagag
gctttccccatcactctggagtggggtgggcgtgtcgtgagggagacagtgtactggttc
cagtatgaggttgaggtgaccctgaacagcaacgtctatgatgttgccatgaaactggtt
accaagcatttccctggggagtttgggagtgagctcctcgtgcagaaagtggtgaacacc
attttacatcacactgccaagaagaacccagacgagtataacccagtctctattgacggg
gcgcatgctcagaggctcacagacgtggtggaaacccagcaggctgttgacacacagcca
ccgactaagatcatactaactgggcagaaatcaaagaccattcacaaagaggagctgacc
atgagtaaagcagagcggagccttcagcagagcattagcgaacaggccctagtgacccag
aaaaggaggacagatcgactgaagcaggagcagaagggagtccagggacacgggcggcca
tcctctccaagtgctgctcaggaaccttcctcctccgccccagccacgcccaccaaatcc
tccttcacccccactgccagtaaggagaagaagatccgtgtcaccactagcgacgggcgg
caggccatgctcactctacaggctcagaccaccttctctgagctccagaggagcattgct
aacgagttcatcgtgcctccagcccagcaatgtattcgacatgggttccctcccaaagaa
cttttgcctcccaaggatggagaggagaatgagcctgtggccctccaacatggggacagg
gtgactgtggagatcctgagaggtccagaggaccacaaggtctccgccccaagtgcttcc
agttcccattcatccctgcattccctccactctgtgaagagtgatgatccagtgacttcc
agcagaatgaatactagcagagagctgcaggacaacattgaccttgagatgtcctccctc
tgtctcctagcaaccttaatgggagaagatgtctggtcatatgcaaaaaaactgccccac
ttattccagcaaggtggcgttttctacaacatagtgaagaaagatatgggcctgatggat
ggcaaacactgcaccctcccacacctgactggaaagacgtttgtgtacaacgcagcagag
gagtgtctggagctgtgtgtggatgcagcgggacacttccccgtgggccctgatgtggag
gacctcgtcaaggaggccctggtgcagctccgctctgaggctgcctccaggagccgggag
ggaagcccctctcacagcctgctgaggctcgggagtggaggcgtggtgcgcaagaaggag
cagctccagagtgtcaacgccttccaaggtaagggccactccctgggcaccgccccaggt
ggctctccccctgaacacaagcccatcacccgccagcacagcagcggggtggacctgagc
gccagcgtctcaaagggacccgacctctctgacatctcagaagatgcaaccaaggagctg
gtgcgcatggctcccggtttcgtcaccatgaaagacagccgacacctggaccctagtatg
atcgaagagcagaggaaaaaactacaggagatggtctcatccatccaagcctccatggac
aggcacctgagggagcagagcaatgcaggggcaggcactgggggccctgcagagaggaca
agtggggctaagatgaatgcttcccaatctgccccaggggtaggtgaccaggaggcctct
tctatggacgtatctactgctggtgctcatggcacaccacatggcacaccagtgaaggca
gggaacaagcctgatggaaaggatgcagcgtcagaggagctggaggaaatggatagccag
gatgcagagcatagcaacgccctggagccaatggatcattcctga
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integrated database retrieval system
