Coregonus clupeaformis (lake whitefish): 121580912
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Entry
121580912 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04115
p53 signaling pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121580912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121580912
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121580912
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121580912
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121580912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
zf-RING_2
Beta-prop_EML
zf-RING_UBOX
Beta-prop_DCAF4
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
zf-RING_10
WDR90_beta-prop_4th
UvrD-helicase
zf-rbx1
zf_C2H2_10
Sina_RING
Motif
Other DBs
NCBI-GeneID:
121580912
NCBI-ProteinID:
XP_041752031
LinkDB
All DBs
Position
14:complement(39734200..39746959)
Genome browser
AA seq
712 aa
AA seq
DB search
MSSNRQQQTGGGAGPGTSSSSTGGTTNANGSTSVGGNVSANVNNSSNVVPSRTLATTGEG
LLVPAAVVQSPRSLATLSRPSSSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPICFE
MIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSD
EKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILM
EFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPTSDMDRNLDSTVPNFEAPSP
APSSLIDSTEYVSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMTRL
TDDSRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIA
GVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD
GFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVC
CVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTD
SQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFK
FDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGESNVLIAANSQGTIKVLELV
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaccgtcaacagcaaactggcggtggagcagggcctgggacaagtagcagc
agtaccggtggcactaccaatgctaacggttccaccagcgtaggcggtaacgttagtgcg
aatgtgaacaattcttcaaatgttgtgccctcacggactctggctacaactggcgaggga
ttgctcgtacctgcagcggttgtccagtctccaagaagcttagccactctaagcagaccc
agttcatcctcttctggcaccagcagaaaacgtcctctccaccaagcacctctctacaat
ggtctcttgaattcctacgaagataaaagcaacgattttgtgtgcccaatctgttttgaa
atgattgaggaggcacacatgacaaaatgtggacatagtttctgctacaagtgcattcgg
cagagtttggaggacagcaataggtgcccaaaatgtaactacatcattgacaacgtggat
cagctctatccaaactttcttgtcaatgaacttattctcaaacaaaaacagagatcagat
gaaaaacggctgaagatggaccatccgaatgggtcaagatggcaagtgttccaagacgtc
ctgggcacagaccaagagaacctagatcttgctaatgtcaacttgatgctggaactcctt
gtacagaaaaagaaacagctggaagcagaatcacaagctgctcaacgtcagatcttaatg
gaattcctcaaagaagcaagaagaaataaaagagagcaactggagcagttgcagaaggag
ctaaactttttggaggaggatatcaagcgtgttgaggaaatgagtggactgtactcacca
acgagtgacatggatcgtaacttggacagcactgtgccaaatttcgaggctccctcacct
gcacccagtagtcttatagattcgacagagtacgtgagtcaaccaccaggttttggtgga
acttcccaggggaagaggcaaacgtggtacaacagcactctggcttcgcggagaaagagg
ctcacagcgcactttgaagatctggagcaatgctacttctctaaccggatgacccgatta
acagatgacagcaggaacctaaatcaactggatgatttcatggagtgtctctcaaagttc
acacggtacaactctgtgcggccgttggcgaccctgtcttatgctagtgatctctacaac
ggctccagtattgtctctagcattgaatttgaccgtgactgtgattactttgccatcgct
ggcgtcaccaagaaaatcaaggtgtttgagtatggaacggtgatccaggatgctgtggac
atacattaccctgtcaatgaaatgacgtgcaactccaaaatcagctgtatcagctggagc
agctaccacaagaatctgttggctagcagcgactacgagggaacagtcatcctgtgggat
ggtttcactggccaaaggtcaaaagtctatcaggagcatgagaaaaggtgttggagtgtt
gatttcaacctcatggatcccaagcttctagcctctggttctgatgatgcaaaagtgaag
ttatggtctaccaaccttgacaattcagtcgccagcatcgaggccaaagcaaatgtgtgc
tgtgtaaagttcagtccgacgtcgaggtatcaccttgcttttggatgtgcagaccactgt
gtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaaggccacagg
aaagctgtgtcctacgctaagtttgtcaacggagaggaaattgtatctgcctcaacagac
agccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcgttcaagggccac
atcaatgagaagaactttgttggccttgcctccaatggagactatgttgcgtgtggaagt
gagaacaactcactttatctctactacaaggggctgtccaagacactgctgacattcaag
tttgacactgtgaagagcgtgctggataaagacaagaaagaggacgacaccaacgagttt
gtcagcgccgtatgctggagagctatgcctgacggggagtccaatgtgctgattgctgca
aacagtcaaggaacaatcaaggtacttgagcttgtttaa
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