KEGG   Coregonus clupeaformis (lake whitefish): 121580985
Entry
121580985         CDS       T08357                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03250  Viral life cycle - HIV-1
cclu03272  Virion - Hepatitis viruses
cclu04144  Endocytosis
cclu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    121580985
   03272 Virion - Hepatitis viruses
    121580985
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    121580985
  09143 Cell growth and death
   04217 Necroptosis
    121580985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cclu04131]
    121580985
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121580985
Membrane trafficking [BR:cclu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    121580985
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    121580985
SSDB
Motif
Pfam: MIT AAA Vps4_C AAA_lid_3 AAA_16 AAA_5 TIP49 AAA_14 AAA_22 RuvB_N IstB_IS21 AAA_25 AAA_2 DUF815 AAA_18 nSTAND3 AAA_17 NPHP3_N RNA_helicase AAA_24 AAA_33 PhoH Mg_chelatase AAA_7 TEBP_OB2-like Parvo_NS1 AAA_28 Sigma54_activat TPR_11 ResIII NACHT bpMoxR TPR_2
Other DBs
NCBI-GeneID: 121580985
NCBI-ProteinID: XP_041752179
LinkDB
Position
14:34258752..34268304
AA seq 508 aa
MEPTNLQKAIAVAQKASQEDQAGNYTEAIKSYQHAVKYFLHIIKREPQGKEGNQKIREKC
KLYLDRVEELQEYLENKEKAIDLASKAAQEDKAQNYEEALRLYQNAVQYFLHVVKYEPQG
DKAKQSIRTKCAEYLDRAEKLKEYLKKKEKAPPTKPVKESQADDKGNESDEGDGPEKKKF
QNQLSGAIVMEKPNIKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPP
GTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFTLAREHKPSIIFIDEI
DSLCGSRSENESEAARRIKTEFLVQMQGVGNDNDGVLVLGATNIPWTLDSAIRRRFEKRI
YIPLPEEHARTFMFKLHLGATPTSLNDSDFVTLGKKTDGYSGADISVIVRDALMQPVRKV
QSATHFKRVRGPSRDNPNILVDDLLTPCSPGDPNGIEMTWMEVPGEKLCEPVVCMSDMLR
SLTSTKPTVNDQDLVKLKKFTEDFGQEG
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggagccaacaaatctacagaaagctatagctgtagcacagaaagcctcccaggaggac
caggctgggaactacacggaggctatcaaatcttaccaacacgctgtcaagtacttcctg
cacattataaaacgtgaaccacagggtaaagagggcaaccagaagatcagagaaaagtgt
aaactgtacctggacagagtggaagaactacaggagtatctagaaaataaagagaaagcc
atagatctggccagcaaggcggcccaggaggataaagctcagaactacgaagaggccctt
cgtttataccaaaacgctgttcagtacttcctacacgtagtaaaatatgaacctcagggc
gacaaagccaaacagagcatcaggaccaagtgtgccgagtacctggacagagcagagaag
ctgaaagaatacctgaagaagaaagagaaggctccacccaccaagcctgtgaaggaatcc
caagctgacgacaaagggaatgagagtgatgaaggagacggcccagaaaagaagaagttt
cagaaccaactttcaggggctatcgttatggaaaagccaaacatcaagtggaatgatgtt
gccggattagagggagccaaagaggccctgaaagaagctgttattttgccaatcaaattc
ccacatcttttcacaggcaaaagaacgccatggagggggatcctactcttcggtcctcct
ggaacaggaaagtcctacctggctaaagctgtggccacagaggccaacaactccaccttc
ttttccatctcctcctctgacctggtatccaagtggctgggagagagtgaaaagttggta
aagaacttgttcacccttgcacgggagcacaagccctccatcatctttatagatgagata
gactcgctgtgtggctccaggagtgagaatgagagtgaggcagctcgccgcatcaagaca
gagttccttgttcaaatgcagggggttgggaatgacaacgatggtgtactggtgctaggg
gccaccaacatcccgtggacgttggactctgccatcagaagacggtttgagaagaggatc
tacatccccctgccagaggaacacgcccgcaccttcatgttcaagctccacttgggcgcc
acacccaccagcctcaacgactctgactttgtcaccctgggaaagaagacagacggctac
tcaggggcggacatcagcgtcatcgtcagagatgcgcttatgcaaccagtcaggaaagtt
caatcagccactcacttcaaacgggtacgagggccatcgagagacaaccccaacatcctg
gtagatgaccttttgaccccgtgctccccaggagacccgaacggcattgagatgacatgg
atggaagtccctggggaaaagctatgtgagccagtcgtttgtatgtctgacatgctgagg
tccctgaccagcacaaagccaacagtcaatgatcaggatttggtcaaactgaaaaagttc
acagaggactttggacaggagggctaa

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