Coregonus clupeaformis (lake whitefish): 121581034
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Entry
121581034 CDS
T08357
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121581034 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121581034 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121581034 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
cclu03029
]
121581034 (rb1cc1)
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121581034 (rb1cc1)
Membrane trafficking [BR:
cclu04131
]
Autophagy
Autophagosome formation proteins
ULK complex
121581034 (rb1cc1)
Mitochondrial biogenesis [BR:
cclu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121581034 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
121581034
NCBI-ProteinID:
XP_041752294
LinkDB
All DBs
Position
14:30202560..30222797
Genome browser
AA seq
1637 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTILKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWQFDTAYINYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYKECIEKSCSTPNKDSDETEEEEKSTDS
VLFLTPTKLPASFSAPGAGGSPDTAEDQESSEMTNSSGLRTALQEADSPERANPLSFNVT
LLDWINVQDRPNDVESVVRKCFDSINRLDPRVIQPFLVECRDTIAKLDNQNMKAIKGLED
RLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIMLTNH
RKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELMERVRVVD
ALSTVPQMYCLAVVEVVRRKLFIGHYREWACALVKDGKHLYETEKYKRETFGKLFRKSFL
RNRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRVPTLCDFE
PLHQHVEMLQQLVLAAQAASVDEMSQTITNLLSEQRGSCSQSAQRSTAALTPRSDSTPGT
TSSKTPSSLSIPGPPCQPLPDPTALEDLSPDSIDAQTFDFETIGHPNMDPVLQQAGSLDL
DSLAESPESDFLSAVNEFVIENSTTPISDPTSPEMMVESLYSSVINAIDSKRMHDTTTLE
RENSKMATLKLSIEKYRSAAEDSQTNLRSVKDDLYCFRGLVLKEQRDFGFALKTMTIEVR
NMVDTIRKREEEELTEQHQAELLSMQQDHEKQLQALTEENQVNRNTVKDVQRAMLELEGL
LERKEKELTQLEAERQRWTEAESVHTQRLRDLEQKISDQAQEVQTVAASRDSLSSQLETL
HIEIERGQQMLRQELEGAEQSHLQELEERMMQQHQAQLDTLARENQEAMERLATENRDKL
CKATDLHAATLTGRDGQLRDLEAWAAELADLRCKLEVELALKESETEEVRLLYEEAKQGQ
QEANVGKATVEAETQSLSEQLVQVNRQLQAKNEEYETGLAELRTLMRIEKDQCISELVGR
HEEERNKLRSELTALQQQAQDAGRSCAEQLQNLQQDLDQQTAALRDDKEVQQRSFEEQRQ
HLRTVICDLQTENDLLTKRLEQDTQAAQERLEKEESLTAAVPDAFKDFEQQKEEMEKRLL
DKIRQLENELQEKQSSEREAGLSKVQTEGRGSETGAPLSLDSALQERLQQETASLHIQME
ILERRKNEEMQNLKTSLIAEQQTNFNTVLMREKLKKEQIISELTEELRKVSQQQEKDKGL
IETLSEDRAIVMQEKKQLEEELNRLSSTALVSSAYYRPNPLALEPTGAGARLGPGTCPGP
GTEVEVGAGACSPELFPDPDRLASVAAIREDDRVDSAVEASMVTVHDNILMMSEEKQRIL
LLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVADLVLIILDERHDNYVL
FTVGPTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYCQAKKAQNRFKVP
LGTKFYRVKAVPWNKKV
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggaagcactctgacatttgacacagagctt
gctgtccaaacagtgttggacctcaaacatgccatccaggtcaaatacaagattgcaacc
cagcatcaagtcctggttgtcaatggaggggagtgtatggttgcagagaggcgagtctgc
agctacagtgctggcactgacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgacgatccttaaaaccaccttctctattgagaatgagatggagctc
aaggtggaggagtcattaatgatgccagcagtctttcacaccgttgcctcgcgaacacaa
cttgctgtggaaatgtttgaagtcgccaagaaactttgctctttctgcgaacgcctggtt
cacgatgaacacctccaacaccaaggttgggctgctatcatggcaaacctggatgactgt
accctgtcttatcagaagctactgtggcaatttgacacggcgtacattaattatcaacaa
gactttgaggacatcaaattgaaactgacaaaactggggacagcagtttcagtcatggcc
aagatccccctgctggagtgtctgacccgccacagctacaaagaatgcatagagaagtcc
tgctccactccaaacaaggactctgacgagacagaggaggaggagaagtccaccgactcg
gtgctcttcctcacccccaccaagctacctgcatcgttctctgctccgggggcggggggc
tcgcccgacaccgccgaagaccaggaaagcagtgagatgacgaacagtagtgggctgagg
acagccctgcaggaggcagactctccagagagggcaaaccccctgtcctttaacgtcaca
ctgctggactggatcaacgttcaagacaggcccaatgacgtggagtcagtcgtgaggaaa
tgctttgactccatcaataggctcgacccacgtgttattcaaccattcttggtggaatgt
cgagacacgattgccaaactggataatcagaacatgaaagccatcaaaggacttgaggac
aggttatacgctctagaccaaatgatagcgagctgtaaaaagttggtcaatgaacagaag
gaacttgctcagggatttctggccaatcagaagcgtgctgagaacctgaaggatacgtcc
gtgctgcctgacctgtgtctcagtcatgccaaccagctgatgatcatgctgaccaaccac
aggaagctgttggacatcaaacagaagtgcaccactgccaaacaggagctggcgaacaac
ctacaagttcgtctcaaatggtgctgctacgtgatgctgcacgcagaccaggatggggaa
aagctgcaggccctgctgaggctgttgacagagctgatggagagggtccgggtggtggac
gccctcagcaccgtgcctcagatgtactgcctggctgtagtggaggtggtccgcaggaag
ctcttcataggccactacagagagtgggcctgtgctctcgtgaaggatggaaagcatctc
tatgagactgagaagtataaaagggaaacgtttggcaagttattcaggaaatcttttctc
cgaaatcgattgtttagaggacttgactcatggccccccacttcattttgcacacgaaag
cccagaaagtttgactttgagcttccagatatttcccttggtgacctgcagtacttaaag
acctgttgtcctacagaggtgcagcctttcctcagggttccaacactgtgtgactttgag
cctttgcaccagcatgtggagatgcttcaacagttggtcctagctgctcaagctgcaagt
gtggatgagatgtctcaaactatcaccaatttactgagcgaacaaagggggtcgtgcagc
cagagtgctcagagatccacggcagcgttgaccccacggtccgacagcaccccagggact
acctcctccaagaccccctcctctctcagtatcccgggccccccctgccagcccctccct
gaccccaccgccctggaggacctgtccccggacagcatcgatgcccaaacctttgacttc
gagaccattggccaccccaacatggaccccgtcctgcagcaggccggctccctggacctg
gactccctggctgagagccccgagtcagacttcttatcggcggtcaatgagtttgtgatc
gaaaactcgaccacccccatcagcgaccccaccagcccagagatgatggtagagtcgctg
tactcgtcggtcatcaatgccattgacagcaagcgcatgcatgacaccaccaccttagag
agggaaaactccaagatggctacgctgaagctgagcattgagaagtaccgatctgctgcc
gaggactcccagaccaacctgcggagcgtcaaggatgacctgtactgcttcagaggcctg
gtgctgaaggagcagcgagactttggcttcgccctgaagaccatgaccattgaggtgcgc
aacatggtggacaccatccgtaagagggaggaggaggagctgacggagcagcaccaggcc
gagctcctctctatgcagcaggaccacgagaagcaacttcaggccctgacagaggagaac
caggtcaaccggaacaccgtgaaagacgtgcagcgggccatgctggagctggaggggctg
ctggagcgcaaagagaaggagctgacccagctggaggccgagaggcagcgctggaccgag
gcggagagcgtacacactcagaggctcagggacctggagcagaagatcagcgatcaggcc
caagaggtgcagaccgtggctgcctccagagactccctgtccagccagctggagacactc
cacattgagatcgagcgtggccagcagatgctccgccaggagctggagggggcagagcag
tcccacctgcaggagctggaggagaggatgatgcagcagcaccaggcccagctagacacc
ctggcccgggagaaccaggaggccatggagcgcctggccacagagaacagggacaagctg
tgcaaggccacagacctccacgccgccactcttacagggagggacggccaactgagggac
ctggaggcctgggcagccgagctggctgacctgcgctgcaagctggaggtggagctggcc
ctgaaggagtcagagacggaggaggtgaggctgctctacgaggaggccaagcaggggcag
caggaggccaatgtggggaaggccactgtagaggcagagacccagtccctcagcgaacag
ctagttcaggtcaacaggcagctgcaggccaagaacgaagagtacgagacgggccttgcc
gagctccggacgctgatgcgcatagagaaagaccagtgcatctcggagctggtgggcagg
cacgaggaagagaggaacaagctccgcagcgagctgaccgccctgcagcagcaggcacag
gacgcagggaggagctgcgcagaacagctgcagaacctccaacaagacctcgaccagcag
acggcagcgctgcgtgacgataaggaagtgcagcagaggagttttgaggagcagaggcaa
cacttgaggactgttatctgcgatttgcagacggaaaatgatctgctcaccaaacgatta
gagcaggacacccaagcagcccaggaacgtttggagaaagaggagtccttgacggctgca
gtaccagatgcctttaaagactttgagcaacaaaaggaggagatggagaaaagactgcta
gacaaaattagacaacttgaaaatgagcttcaggaaaaacaatcctcagaaagagaggca
gggttgtcgaaggtgcagacagagggtcgggggtccgaaacaggagctcctctctccctg
gactctgccttgcaggagcgtctgcagcaggagacagcctccctgcacatccaaatggag
atcctggagaggaggaagaacgaggagatgcagaacctcaagacctcgctcatcgcagaa
caacagactaacttcaacactgttctgatgagagagaagctgaagaaggaacaaatcatc
agtgagctgacagaggagctgcggaaggttagccagcagcaggagaaggacaaaggtctg
atagagacgctatctgaggaccgggccatcgtcatgcaggagaagaagcagttggaggag
gagctgaaccggctgagcagcacagccctggtgtcctcggcctactacagacctaaccca
ttagccctggagcccactggagccggggctagacttggacctgggacctgtcctggacct
gggactgaagttgaggttggggctggagcctgctccccagagctcttccctgacccagac
agactggcatctgtggccgccatcagagaggacgacagagtggactctgctgtggaggcc
agcatggtcaccgtgcacgataacatcctgatgatgtcggaggagaaacagcggatactg
ttacttgagaggactttacatatgaaggaagaagaaaacaagcgcctcagtcaaagactg
atgtctcaaagcatgtcctcagtgtcgtcacgacattcagagaaaattgccatcagagat
ttccaggtcgctgacttggttctgatcatcctagatgaaaggcatgacaactatgtgcta
ttcaccgtgggtcccaccctgtacttcctccactctgagtccctcactgcactggacctc
aaaccagatcctatgtttacttcagcatcaggagcctcaagacggccgtgggttcttgga
aaagtgatggagaaagaatattgccaggcgaaaaaggctcaaaaccggttcaaagttcct
ttgggcaccaagttctacagagtgaaagctgttccgtggaacaagaaagtataa
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integrated database retrieval system
