Coregonus clupeaformis (lake whitefish): 121581110
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Entry
121581110 CDS
T08357
Name
(RefSeq) nicastrin
KO
K06171
nicastrin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121581110
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Gene cluster
GFIT
Motif
Pfam:
Nicastrin
Ncstrn_small
Peptidase_M28
Motif
Other DBs
NCBI-GeneID:
121581110
NCBI-ProteinID:
XP_041752427
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Position
14:26381153..26393570
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AA seq
697 aa
AA seq
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MGLESSKWVIIFLVCWLYKNVSCNSVEQKIYVVLNNTVPCVRLLNATHQIGCQSSISGDT
GVIHFLESEADLEWPLSKGPNPPYMVVLESSLFTRSIMMKMKNESSRVAGVAVVIPNTSP
PEFSPHTTCPNENTGVYSDNYGPNLAHCNSTVWNPLGNGLSYEEFDFPVFSLNEDNETEL
IKQCYFDHNRAVNGSAPQYPLCAMQLFSHMHAVTNTPTCMRRNNINYSINPEMVCDPLSD
NNVWGSIRPYNDTVFGHKENESVVIAAARLDSRAFFWEVSTGAEGSISGFVTLLAAAQAL
REVTHEAPPTRNILFAFFQGEAFDYIGSSRMVYDMEKGKFVIDLDNVHSILEIGQVAVHS
GTNLFLHSDPVSRRNNTVNDEITNLVNNLQSSTAGLSFLLVEPGVSQPLPPSSLQRFLRA
RPIPGIVIADHKSAFNNRYYESFYDNAANLNLTYPSNLSPEEQLEFVTDTAKSLTDVATL
VARALYKQAGGNESKVNTINADPKIVTQMLYGFLVSSNNSWFQAMMSPDLQDILKPSPPQ
YYVGVAMSSTPTRLVQYLLANFTGAATNLTQSQCQKPDELPNESRQMYSYLWVQGIVPPN
STQRDSFCVRASVRLTRAISPAFELGEYASKDYSTWTESRWKFIKARIFLVASRDLEMLT
LGVGVAVLFTFLLLTYFVSSKADVLFSSTREPASAAY
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgggtttggaatcgtcgaaatgggttataatattcttagtttgttggctttacaaaaat
gtgagctgtaactctgttgagcagaagatttatgtggtgctgaataacactgtaccatgc
gttcgactgctcaatgctacacatcagattggctgccagtcctcgatatcaggtgataca
ggtgtgatccatttcttggagtctgaggcagatctggaatggcctttgagcaaaggaccc
aatcctccttatatggttgtgttggaatcatccctcttcaccaggtctatcatgatgaag
atgaagaatgaatccagcagggtagctggggttgcagtggtgatcccaaatactagccca
ccagagttctcgccacacacaacatgtcccaatgagaacacaggcgtatactccgacaac
tatggtcctaatttggcacattgtaacagtactgtatggaaccctctggggaacggtcta
tcctatgaggaatttgacttccctgtcttctccctgaacgaagacaatgaaacagagtta
atcaaacagtgctactttgaccataatcgtgcggtgaatggcagtgccccacagtaccct
ctgtgtgccatgcagctcttctcccacatgcacgctgtcaccaatactccaacctgcatg
agacgcaacaacatcaactatagcatcaacccagagatggtgtgtgaccctctgagtgat
aataatgtttggggttccatccggccctataacgacacagtcttcggccacaaggagaac
gagagcgttgttatagcagcagccaggctggacagcagggcatttttctgggaggtttca
actggagcagagggaagtatctcagggtttgtcactctgcttgctgctgcccaggcactg
cgtgaagtcactcacgaggcccctcccacacggaatatcctctttgccttcttccaaggg
gaagcctttgactacattggcagctctcggatggtttacgacatggagaagggcaaattt
gtgatagacctggacaatgttcactcaatactagagattggtcaggtggccgtgcacagt
ggcaccaacctctttctccactcagaccctgtgtccaggaggaacaacaccgtcaatgac
gagattacgaatcttgtgaacaacttacagtcctccacggctgggctcagcttcttattg
gttgagcctggtgtgtctcagccactcccgccctcctccctccagcgtttcctgcgagct
cggccaatcccagggattgtgattgcagaccacaaatctgcgttcaacaacaggtactat
gagagtttttacgacaacgctgctaacctgaacctgacttatccatctaacttgagtcca
gaggaacagctggagtttgtgactgatactgcaaagtctcttactgatgtggctacgttg
gttgcacgtgctctctacaagcaggccgggggaaacgagtccaaagtcaacaccatcaac
gcagaccccaaaatagttacccagatgctgtatgggtttctggttagttccaacaacagc
tggtttcaggcaatgatgtccccagacctacaggacattctcaagcccagcccaccacag
tactatgttggtgttgccatgtcttccactccgacacgtctggtccagtacctcctggcc
aattttactggagcagccaccaacctcacccagagtcagtgccagaagccagatgagctg
ccaaacgagagcagacagatgtactcctatctctgggttcagggcattgtcccacccaac
agcacccagagagattccttctgcgtacgtgcatcggtacgcctgaccagagcaatatcc
cctgccttcgagctgggagagtatgcttccaaagactactccacgtggacagaatcacgg
tggaagttcatcaaagctagaattttcctagtagccagccgggacctggagatgctgacc
ttaggcgtgggagtggctgtgttgttcacattcctactgctgacatactttgtcagctcc
aaggcagacgtcctcttcagctccacgagggaacccgctagcgccgcctactga
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