Coregonus clupeaformis (lake whitefish): 121581111
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Entry
121581111 CDS
T08357
Name
(RefSeq) coatomer subunit alpha-like isoform X1
KO
K05236
coatomer subunit alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121581111
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121581111
Membrane trafficking [BR:
cclu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
121581111
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121581111
Exosomal proteins of bladder cancer cells
121581111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
121581111
NCBI-ProteinID:
XP_041752428
LinkDB
All DBs
Position
14:26307798..26360065
Genome browser
AA seq
1225 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPSAVDTE
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRRC
LGSKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTA
VWVARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQ
QKRSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCSIHENIRVKSGAWDES
GVFIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYR
FKLALVNRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNI
EVALEAAKALDERGCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRK
MMKIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETF
DPEKETVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADMDVD
APGGEGWGEDAELQLDEDGFMDAQDGLGEEGGATKEEGGGWEVEEDLDLPPELELPAGAG
VGAEDGFFVPPTKGMSPTQLWCNNSQLPVDHVLAGSFETAMRLLHDQVGVVQFGPYKQLF
MQTLSRGRTCYLGLPSLPCLRGNPQRNWKDCGAKQGLPAVGLRLSDLIARLQQCYQLTTA
GRFEEAVERFRAILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLD
QQKRLCEMAAYFTHCSLQPVHMVLVLRTALNLFFKLKNFKTAAGFARRLLELGPKPEVAQ
QTRKILAACEKTLTDAHQLNYDPHNPFDLCAASYTPLYRGRPVEKCPLSGACYCPPYKGQ
VCRVTQVTEIGKDVVGLRVSPLQFR
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaaattcgagacgaagtcggcccgtgtgaaagggctgagtttccaccctaag
cggccctggatccttgctagtcttcacaatggagtcatccagctgtgggactatcggatg
tgcacactgattgacaagtttgatgagcatgatggccctgtcagaggaattgatttccac
aagcagcagcctctgtttgtgtctggaggcgatgactacaaaatcaaggtgtggaactac
aagctgcggcgttgcctcttcactcttcttggacacctggactacatccgcaccaccttc
ttccatcatgagtatccctggattctgagtgcctcagatgaccagaccatccgcatctgg
aactggcagtccaggacatgcgtctgtgtcctgactgggcataatcactatgtgatgtgt
gctcagttccacccctctgaggacctggtggtgtcggctagcctggaccagactgtgcgc
gtgtgggatatctctggtctgaggaagaagaacctctctcccagtgccgtggatactgag
gtgcgaggcatctctggcgtcgatttgtttggcgcttccgatgccgtcgtcaaacacgtg
ctcgagggtcacgaccgtggggtcaactgggccgccttccatcccagcatgcccctcatc
gtctcaggggccgacgaccggcaggtcaagatctggaggatgaacgagtccaaggcgtgg
gagctggacacctgcaggggccactacaacaacgtgtcctgtgctgtcttccacccccgc
caggagctcatcctttccaactctgaggacaagagcatccgtgtgtgggacatgtccaag
aggactggcgtccagaccttccgcagggaccacgaccgcttctgggtgctgggggctcac
cccaacctaaacctatttgctgctggtcatgacagtggtatgctggtgtttaagctggag
cgtgagcgtccggcctatgccgtgtacggcaacatgctctactatgtcaaggatcgcttc
ctgcgacagctcgacttcaacagcagcaaggacactgccgtcatgcagctacgcaggtgt
cttgggtcaaagttcccagtgttcagcatgtcttacaaccccgcagagaatgctgtcctg
ctctgcactagggcaactaacctggagaacagcacctatgacttgtactccattcccaaa
gagagcgactctcagaatccagatgctcctgaggggaagaggtcctctggtctaaccgca
gtctgggtcgccaggaacaggttcgctgttctggaccgcatgcactctctgctgatcaag
aacctgaagaatgagattgtgaagaaggtacaggtgcccagctgtgaggagatcttctac
gccgggacgggctccctgctgctccgcgacgcagacggagtcactctctttgacgtgcag
cagaaacgctcgctggccacagtgaagatcgccaaggtcaagtatgtcgtctggagcgcc
gacaccagccacgttgccctgctggctaaacacgccattatgatctgcaacaggaagctg
gagagtctgtgcagcatccacgagaacatccgcgtgaagagcggagcctgggacgagagt
ggagtcttcatctacaccacctccaaccacatcaaatacgccctcacctcaggtgatcat
ggtatcatccggactctggacctgcccatctacgtgacccgggtcagaggcaacagcgtc
tattgtcttgaccgtgagtgcagaccccgcgtgctgaacatagacccaacggagtaccgc
ttcaaactggctctggtcaaccgcaagtatgaggaggtgctgcacatggtgcgtaatgct
aagctggttggccagtccatcatcgcctacctgcagaagaagggctacccggaggtggcg
ctgcacttcgtcaaggatgaaaagacccgcttcagtctggctttggagtgtggcaacatt
gaggtggcgttggaggctgccaaggctctggatgagaggggctgctgggagcggctgggc
gaggcggcgctgctgcagggtcaccaccaggtcgtggagatgtgctaccagaggaccaag
aacttcgacaagctcaccttcctctacctcatcaccggcaacctggccaagctccgcaag
atgatgaagatagctgagatcaggaaggacatgagtggacactaccagggtgctctgtat
ctgggggacgtcagcgagagagtccgcatcctgaagaactgtggccagaagtcactggca
tatctgactgctgccacccacgggatggacgaagaggctgaagccctgaaagagaccttt
gacccagagaaggaaactgtccctgaggtggaccccaatgcccagctgctgcagccacct
cctcccatcaaccccctggataccaactggcccctgctcactgtgtccaagggcttcttc
gagggagccattgcagccaaggggaaggctggtcagatggctgcagacatggatgttgat
gccccaggaggagagggctggggagaggatgcagagcttcagctggacgaggatggtttc
atggatgcccaggatggattaggggaggaaggaggtgccacgaaggaggagggaggaggc
tgggaggtagaggaggatctggacctgcctccagagctggagttgccagctggtgccgga
gtaggggctgaagatggtttctttgtccctcctaccaagggcatgagccccacccagctg
tggtgcaacaactcccagctccctgtggaccacgtcctggctggttcctttgagaccgcc
atgagattgctccatgaccaggttggggtggtgcagtttgggccctataaacagctgttc
atgcagactctatcccgcgggcggacatgctacctgggcctgccgtctctgccctgcctg
cgtggcaacccgcagaggaactggaaggactgtggggccaagcaggggctgcctgctgtg
ggtctgcgtctctcagacctcattgcccgcctgcagcagtgctaccagctcaccactgcc
ggccgctttgaggaggccgttgaacgcttccgcgccatcctgctgtctgtgccactgctg
gtggtcgacaacaagcaggagatcgcagaggctcagcagctgatcacaatctgcagagaa
tacattgttggcctcaccatggaaacggaaaggaaaaagttgcctaaagacacattggac
cagcagaagaggctgtgtgagatggcagcttacttcacccactgcagtctccagcccgtc
cacatggtccttgtcttacgtacagcactaaatctattctttaaactgaagaacttcaag
acagctgccggttttgcccgtcgtctgcttgaactaggacccaaaccagaggtggcacag
cagacacgcaagatcttggcagcatgcgaaaagacgctgacagatgcccaccagctgaac
tacgacccccacaatccatttgacctgtgcgctgcctcgtacacacccctgtaccgtgga
cgcccagtggagaagtgccccctctctggggcctgctattgccccccctacaagggccag
gtctgcagggtcacacaggtgacggagatcggaaaggatgtggttggtctgcgtgtcagc
cctctgcagttccgttag
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