Coregonus clupeaformis (lake whitefish): 121581128
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Entry
121581128 CDS
T08357
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121581128 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
121581128 (acin1a)
03015 mRNA surveillance pathway
121581128 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121581128 (acin1a)
03041 Spliceosome [BR:
cclu03041
]
121581128 (acin1a)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121581128 (acin1a)
Spliceosome [BR:
cclu03041
]
Complex C
Other components
EJC/TREX
121581128 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
121581128
NCBI-ProteinID:
XP_041752458
LinkDB
All DBs
Position
14:14028854..14058206
Genome browser
AA seq
1867 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLPKSGQKNALIKRLKGALMLENLQRTSHHH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAVEDDDTDQEDHTQGNNSSA
CAAPDQDDAPVLVDQHKPLGPSEGEGLAGPASEGEGHRAKDGHVSGPPASTSPTSAPAAV
ASLSVRVAGGGQRQERVPTSSQVPADSDDDSDGGDEDGEDEDWNSGARRRNLGEPPRGQL
ARERSEGSRQPPQHIPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGELPARQRT
SSTSSSGSSSSGSRSSSPEPQSNAERKPGPLTLLARKMASEGAFSGVGWHGRGEAERQDN
NAATATIFPGRGPQEGTVSAITHTANAAASLPFPSLVPVTNQGVLGGHLPHSQVPVSVLR
PTIMEERDAAWQQENKERELQAEREREKALEQERLRAMELERQRIFEQQRAMEQERERAL
KLEREEREKALEAERKERERALEQEREEREKALEAERKERERALERERAQALEREREERE
KALVEEREKSMARERALELEKEKAMELERQRAMERERALQQEREERERAIEKERVKSFER
EERERALEREREQALERERVETARALQRERLEREKALDQERLEREKALELERQKALKREQ
EEREKALELERIEKEKALEQERVEKEKALELERQKALKREQEEREKALELERIEKEKALE
QERVEKEKALELERQKALKREQEEREKALELERIEKEKALEQERVEKEKALELERQKALK
REQEEREKALELERIEKEKALEQERVDKEKALELERQKALKREQEEREKALELERIEKEL
ALEQERVEQEKALELERQKALEREREERARALEQERIEREKALDKERAMEKERVEREKAL
EREREEKERVLEQKALQREKVERESTLEQDKERAKVAERESHLPPWKRGREIGLTPLPTP
PLSTGAGRMAATEEGGKSHVPSLPQTASRDNQPAESGTPLSPTIATPLSPQSSFKKFRFL
RDPPVLSQSCSASLVIKRPRTFSDSPHPQASALQSPRKPGEQEQEGTLQGPNPSAGQAVP
QMPARQGVLVSGPPAADTTGPETPVIATLGKSPEEEKAKELASEEQVLADKEETDKQEVG
EMARGEKGVGAGNVPSGRAEAVVPPSPPPEEGNVDRGRERSQKKEEKRGRQASSSSDSSD
SDSGSSSSHSSGSSSSSQGKTRTTPSGRKPEKPQTNTISQDKETVSQPEDSTEAPKAPQR
KNRGSGEEEEKDMTIDGARHSKKPFLGKPAGEGNEQKKDSEGEKEKTNTTREVKEAAMTE
PERAPEGSEESLTPKTFAARRISLSSSKASPGVVSAEGEAESGAGPGRKRRWGSSTAVTA
KKPSISLTTDSLKSLIPDIRLSPGQEAVVDLHPEETHLSGGEEDRERGEQDFKIRRTVTQ
VVLSETQENGPKESKRSEHKDEDREDGGEVKGDREKMDNLFQRDSMETQSPSPPIHDMEM
NTVSPSDTLIRRSISQQKSGVSITIDDPVRTAKQPSPPRGKVSNIVHLSNLVRPFTLGQL
KELLSRTGTMLEDGFWIDKIKSHCYVTYSIAEEAVATRAALHGVKWPQSNPKFLSVDFSQ
QEELDFHRGLPPPERAGEEERGAASMPGRGRGVALPPLLPESDQWAEREREMERRERTRA
EREWDRDKVRDFGPGKPGEEAGPRRSRSRERKRKEMGKSKERKMDKKEKAPEEPPAKLLD
DLFNKTKAAPCIYWLPLTEEQFTQREAARQERMKEREKRRKAQQEEEEKKREEERKERIK
AGSSASGERGEGDRDRERDRERGRDRDRDREGDKRREGSHRRPGGSSAGVGRRSRSRSDP
PPRDRRR
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggaggccgctacaatctctacgggtggcg
gatttgaaagctgctttagaggagcgggggcttcctaaaagcggacagaaaaatgctctc
attaagaggctcaaaggggctctcatgctggagaacctccagagaacctcacaccatcac
ataggactgcagccaaactcccagattggtgaagagatgagccagaacagcttcattaag
cagtatctggcaaaacagcaggagctcttgaggcagcgtctggaaagagaggcccgggaa
gcagtcgaagatgatgatacagaccaagaggaccacacacagggcaataacagctctgcc
tgtgctgccccagaccaggatgacgcacccgtgttggttgaccaacacaagccgcttggc
ccctccgagggagagggactagcaggcccggcaagcgagggagagggacacagggccaaa
gacggccatgtgtctggtccacctgcctctacctcgcctacctctgcccctgctgccgtg
gcctctctgtctgtgcgtgtagctggtggtgggcagcgacaggagagagtcccaacctct
agccaagtcccagcagatagcgatgatgacagcgacggaggtgacgaggatggtgaggat
gaggactggaatagcggtgccaggaggaggaatctaggagagccaccaagaggccagctg
gcaagagagaggtctgaaggatcccgccaacccccacagcacatccctcccctgttgtct
ccgcagcttcgacagcctacccctcctccctcccctcccccagagttatcattcccactg
cctgatacccctaaacaaagcccccctagtccaggtgagctcccggctaggcagcgtact
tccagtacatccagctctggctcctctagcagtggcagtcgtagtagcagtccagaacca
caaagcaacgcagagcgcaagcctggcccactgaccctgctggcacgcaagatggcatca
gaaggggctttctctggagttgggtggcatggacgtggggaggcagagaggcaggacaac
aatgctgcaactgcaacaatatttcctggtagaggtcctcaagagggcacagtgtctgcc
atcacccacacagccaatgctgcagccagtttgcccttccccagtctggttccagtcacc
aaccagggtgtacttggaggccatctcccccacagtcaagttcctgtgagtgtgcttagg
cccactataatggaagagagagatgctgcatggcaacaagaaaacaaggaaagggagctg
caggcagagagggaaagagaaaaagcccttgagcaagagagacttagagccatggagctg
gaaagacagagaatatttgagcaacagcgtgccatggagcaagagagggaaagagctttg
aaattagagagggaggagagggagaaagcattggaggcagaaaggaaggagagggaaaga
gctttggagcaagagagggaggagagggagaaagccttggaggcagaaaggaaggagagg
gaaagggctttggagcgagagagggcgcaagctcttgaacgagagagggaggaaagagag
aaagctttggtggaagagagagagaagtctatggcaagagagagggcccttgagcttgag
aaagagaaggctatggagttagaaaggcagagagccatggaacgagagcgagctttgcag
caagagagagaggagagggaaagagcaatagaaaaagaaagagttaaatcttttgagcgg
gaggagagggaaagggctctggagcgggagcgggagcaagctcttgaacgagaaagggtg
gagacagcgagagctttgcagcgagaacggctggagagggagaaagccttggatcaagaa
cggttggagagggagaaagctttggagctagagaggcagaaagctttgaaacgggaacag
gaggagagggagaaagctttagagctagagcgtatagagaaggaaaaggctttggagcaa
gagcgagttgagaaggagaaagctttggagctagagaggcagaaagctttgaaacgggaa
caggaggagagggagaaagctttagagctagagcgtatagagaaggaaaaggctttggag
caagagcgagttgagaaggagaaagctttggagctagagaggcagaaagctttgaaacgg
gaacaggaggagagggagaaagctttagagctagagcgtatagagaaggaaaaggctttg
gagcaagagcgagttgagaaggagaaagctttggagctagagaggcagaaagctttaaaa
cgggaacaggaggagagggagaaagctttagagctagagcgtatagagaaggaaaaggct
ttggagcaagagcgagttgacaaggagaaagctttggagctagagaggcagaaagctttg
aagcgggaacaggaggagagggagaaagctttagagctagagcgtatagagaaggaattg
gctttggagcaagagcgagttgagcaggagaaagctttagagctagagaggcagaaagct
ttagagcgggaacgggaggagagggcaagggctttggagcaagaaagaattgaaagggag
aaagcccttgataaagaaagagccatggagaaagaaagagtggagagggaaaaagctttg
gaacgtgagagagaggagaaggagagggttttagaacagaaggccctgcagagagaaaaa
gtggagagggagagcactttggaacaagataaggaaagggctaaggtggctgagagggag
agtcatcttcctccatggaaacgtggtcgtgagattggtcttacccccctgcccactcct
cccctctccacaggagcaggtagaatggcggcaacagaggagggtgggaagtcccacgtg
ccatccctaccccaaacagcatcgagagacaaccagccagctgaatctggtacgcccctg
tcaccaactatagcaacgcctctgtcaccccagtcctccttcaagaagttccgtttcttg
agagaccccccagttctatcccaatcttgctctgcatccctggtcatcaagaggccccgt
acgttctctgacagcccccatcctcaggcctcagctctccagtccccaagaaaacctggg
gaacaagagcaggaaggtactctgcaggggcccaatccttctgctggacaggcagtacca
cagatgcctgcaagacagggggtccttgtttctggaccacctgcagcagacacgacaggg
ccagagaccccagtgattgccacgctaggcaagagtcctgaagaagaaaaggctaaggag
cttgcgtcagaggagcaggtcctagcagataaggaggagacagacaagcaggaagtggga
gagatggccagaggtgaaaaaggggtgggtgcaggaaacgtcccctcgggtcgagcagaa
gctgtggtacctccctcacccccaccggaagagggcaatgtagaccggggaagggagaga
agtcaaaagaaagaagagaagcggggaagacaggcttcctcatctagtgactcctcagat
tctgactctgggtcatcctcctcacattcgtctggttcatcttcgtcctcccagggcaaa
acccgcaccactcccagtggtagaaagcctgagaaacctcagacaaacaccatatcccag
gataaggagacagttagtcaacctgaggattcaactgaggccccaaaagccccccagcgc
aaaaatcgaggatctggggaggaggaagagaaggacatgaccatcgatggagccagacac
agcaagaaaccgttccttggaaaacctgctggagagggcaatgagcagaagaaggacagc
gagggagagaaggaaaagacgaacactacaagggaggtgaaggaggctgccatgactgag
cctgagcgggctcctgaaggcagtgaggagagtctgacaccaaagacattcgcagcccgt
aggatctcccttagcagtagcaaggcctctccaggtgttgtcagtgccgagggcgaggca
gagtctggggccgggcccgggaggaagaggaggtggggttccagcactgcagtcacagcc
aagaaaccatccatcagcctcaccacagactctctgaagtctctgatcccagacatcagg
ctgagtccaggccaggaggctgtagtggatctgcacccagaggaaactcacctctctggg
ggagaggaggacagggagcggggcgagcaagacttcaagatcagacgcacagtcacacag
gtggtcctgtccgagacccaggagaatggaccgaaggagtcaaagaggagtgaacacaag
gatgaggacagagaggatggaggggaggttaaaggcgacagagagaagatggacaactta
ttccagagagactccatggagacacaatccccctctcctcccatccatgacatggagatg
aacacagtgagccccagtgacaccctgatccgtcgctccatcagtcagcagaagtctggc
gtgtccatcaccatagacgatcctgtccgcacagccaagcagccttctcctccacgaggc
aaagtgtccaacatcgtccacttgtccaacctggttcggccgttcaccctgggtcagcta
aaggagctgctcagcaggactggcaccatgctggaggacggcttctggattgacaagatc
aaatctcactgctacgtcacatactccattgcagaggaggcagtggccactcgtgcagca
ctacatggggtgaaatggcctcagagcaacccaaagttcctcagtgtggacttcagtcag
caagaggagcttgacttccacagaggcttgcctccccctgagagggctggagaggaggag
cggggggctgcgtcgatgcctggccgaggtcggggggtggccctgccccctctcctgcca
gagagtgaccagtgggcggagcgagagcgtgagatggagcgcagggagaggacccgggcg
gagagggagtgggacagggacaaggttcgggactttggcccaggaaaacctggagaggag
gcgggccccagacgatcgcgctccagagagaggaagcgcaaggagatgggcaagagcaag
gagaggaagatggacaagaaagagaaagctccagaggaaccccctgccaaactgctggat
gacctgttcaataaaaccaaagcagccccttgtatatactggctccctctcacagaagag
cagtttacacagagggaagcagcccgacaagagaggatgaaggagcgagagaagaggagg
aaggcgcagcaagaggaggaagagaagaaaagggaggaagagcgcaaagaaaggataaaa
gcagggagtagcgcatctggcgaaagaggcgagggggacagggacagagagcgagacagg
gagaggggcagagacagggaccgagacagagagggtgacaaacgcagagaaggcagccac
cgcagaccagggggcagcagtgcaggggtgggcagacgctcccgcagccgcagtgatcct
ccacctcgtgacagacgacgctag
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