Coregonus clupeaformis (lake whitefish): 121581134
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Entry
121581134 CDS
T08357
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121581134 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121581134 (chd8)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121581134 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
HDA2-3
RcpB
Chromo_MIT1
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
121581134
NCBI-ProteinID:
XP_045080629
LinkDB
All DBs
Position
14:14168820..14204582
Genome browser
AA seq
2602 aa
AA seq
DB search
MADPIMDLFDDTPLFNLDALPGDAFTQGSSDPVEEALKLALGQVEPPSEPTPALSIPVAA
PTIPDPVPVQQQVPVPVALPQTVSIASTVPQTTLSVASNTSRAATILLGSPLTVNSSAGT
TQQITTQQFTTQQLTQIAQQLTPQQLAAITQQAGGQGGSKIVILKGPGGHAQVLQTVAGT
GSQGGKVTFARVLSGTQLRPGMQILSGGTVLNQASPGQGQVKVGTGIQRLVQSPNGPLKQ
VQLISMPQGQSQGQTQTVQMQIPQAQLAQAQAQVQLQTQGQAMQMKQIQLQPQTQVQLQS
AMQTQVTATATGTTSVRPQGVTLTTVPQQGEAKRITLVLQQPHGGTAQGGTVTVGGSGQL
QQGQQQRLVLGNLPGKLVLQGGQLAALTQARAGQTGAQPKVLTIQLQVQQQPNQQGGPKF
QLVSGGQGSSPQVVQISQGQGGQRLAMPLKLLLQPQMSSTSTAGGGVSIVKVINTSAAGS
APSTTTTMASTGIRLAKAQEPVRRVEILGKQEKANRIVAEAIARAKARGERNIPRVLNQD
ELPAGQKAADQGAAATTTGTPGAKKKGGGGGSKKKSPPGGKGMACAEKKGKAKAAGGAAV
GTPVGASGTSGSKSKAKINTITLVGGKKRKRNASSDHSDGELSPASPSKALEEDMLSKRR
SNRQVKRKKYTEDLDIKITDDEDEPEEDVDVTTTAAVPSITGGAAGQLMGEQLKQELQLD
GDSLSSMQFFVENPNEEDAAIVDKVLSMRLTKKEVSPGQYINAEEFFVKYKNYSYMHCEW
ATLQQLERDKRIHQKLKRFKIKHAQMRLLLQEEEEPFNPDYVEVDRILDESNSVDKDNGE
PVVYYLVKWCSLPYEDATWELREDVDADKVEEFRKIQDRQPQLKRTPRPQAAAWKKLEEF
REYKSGNVLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSISLLSEVFGAGVQGPF
LVIAPLSTITNWEREFATWTDMNAIVYHGSLASRQMIQQYEMYCKDDKDHLIPGAYKFDA
LITTFEMILSDCPELREISWRCVIIDEAHRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQN
TVEELFSLLHFLEPAQFSSESEFLRDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLA
PKQETIIEVELTDVQKKYYRAILERNFSFLSMGATSNSNVPNLLNTMMELRKCCNHPYLI
TGAEESIVAELREVYDPMVPDFHLQALVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRC
LDILEDYLINKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAA
DTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAV
LQSMSSNKESNVNGQIQQFSKKEIEDLLRKGAYAAIMDEEDEGSKFCEEDIDQILQRRAT
TITIESEGKGSTFSKASFVATENRTDIALDDPEFWQKWAKRADIDFDSMNRKNTLVIDTP
RVRKQTRQFATLRGEGGEISDPDSDDEYPPANSRQSRSSRRSERHTGNGYGRTDCFRVEK
HLLVYGWGRWRDILSHARCKRRLGEHDVETICRVILVFCLLHYRGDENIKSFIWELITPP
ENGREPHTLLNHSGLSIPVPRGRKGKRVKAQSSFDVQKVEWIHKYNPDSLLLDDSYRKHL
KHQCNKVLLRVRMLYYLRQEVIGEHADSVLRGADARDIDIWMPEMEQQEVPSGWWDTEAD
RSLLVGVFKHGYEMYTTMRADACLCFLERAGRPDDQAIDAEQHSADAELGDGGDDDKYSE
DPEFKPASRHTKDLYEEADSMNMGDDICVEDKAGPVKTKGPPPGQSGACEWPTSSSLTAR
LRRLITAYQRSYKREQLKVEAAEKGDRKRRRCEQASKLKEIARQERQQRYQLLPSTINSA
SICVLNLRWTRREECDFYRVVSTFGVERIKKEVNAQEGEEAELDWARFRTFARLDKKTDE
SLSRYFRCFMAMCRRVCNLRPTRGEDPSELGQSMAPITEERASRTLYRISLLRRLRERVL
PHPSMEERLLLAPLSSELPAWWSTPAHDRELMLGAAFHGVSRTELSVFSDPQFSFSQARH
DYLEIQPAPATPLRQPQAEEGSAVEEEEGLNRESGLLGASEALGHSDTQTTPLSRPDGKG
RARTGLGWKKSRGRGPRSGGRKGGRSGGEGGMSDSDSDSDSGSSTSSQRSGSSDDSGDSD
AERERAALKMEEDGENSLLSMTPSQDGAPPESLTDPFRVDWPKDRVLINRLESLCTLVLS
GQWPTGRRYASDAQLNPGSDDLGTGDELSFARLMRKGNSTPGGEGADGGESEFTVKLLKE
EGLKLTFSKHALMSNGSGGEGSGRRKRRDQELSDPDGAVPVVDAMTGTVLSGERAPRRRD
LPNWLKENPDYEVAGDMLELLGNRSKRKRKRTEKAVALSGSEKIKIIDMRTGKKVGAAHG
PMLQDLREFLEENADCAVAPEWAETVRSSGFLPDSLFHRLLSAHSVIPKRDRHRHHHTPQ
PAPQEDPLLGGGEEETLVSDGAYMMEDEDLEDSSFLTQAFDVKMEGGDSLSQGGYESSDR
EALLDDVIMAQKDSDSSSSSED
NT seq
7809 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccatcatggacctctttgatgacacaccgctgttcaacctggatgccctg
ccaggcgatgccttcacccagggctcctcagaccctgtggaggaggctctgaagctggct
ctggggcaggttgaacccccctccgaacccaccccagctctcagcataccagtggcagct
ccaaccatcccagacccagtccctgtgcagcagcaggtcccagtcccagtcgccctccct
cagactgtttcaatagcttcaacagtacctcagacaacactctctgtagccagtaacact
agtcgggctgccacaatcctgctgggctcacctctgactgtcaatagctctgctggcacc
acacaacagatcaccacgcaacaattcaccacacagcagctcacacagatcgcacagcag
cttactcctcagcagctagctgccatcacccagcaggccggagggcagggaggctccaag
atcgtcatcctgaaaggacctggggggcatgcacaggtgctgcagactgttgctgggaca
ggctcccaagggggaaaggtcacctttgccagggtactgtctggaacccaacttaggcct
ggcatgcagatactgtctggaggaacggtcctgaaccaagcatctcctgggcagggacag
gtgaaggtggggaccgggatacagaggctagttcagtcgcccaacggacccctaaagcag
gtgcagctgatctccatgccccagggccagtcccagggccagacgcagactgtccagatg
caaataccgcaggcccagcttgcccaagcgcaggctcaagtgcagctccaaacccaagga
caggcgatgcagatgaagcaaatccagctacagccccagacacaggtgcagctgcagtct
gccatgcaaacacaggttaccgccactgctacaggcaccacttcagtccgaccacaaggg
gtcaccctcactacagtaccacagcagggtgaagctaagaggatcaccctggtgctgcag
cagccccatggtggcacggcccaggggggtactgtgacagtgggtgggtcgggtcaactg
cagcagggccagcagcagaggctggtgttgggtaacctcccagggaagctggtcctccag
gggggtcagctggctgcgctcacccaggccagggcagggcagacgggggctcagcctaaa
gtgcttaccatccagctgcaggtgcagcagcaacccaaccaacaggggggacccaagttt
cagctggtgtctggagggcaaggtagcagcccacaggtggttcagatctcccaggggcaa
ggtggacagagactggccatgcccctcaaactgctgctgcaaccacagatgagctccacc
tccacagcaggtggtggcgtctccatagtgaaggtcatcaacacttcagctgccggctct
gccccttccaccaccaccactatggcatcgacagggatacggctggccaaggcccaggag
cctgtacggcgcgtggagatccttggcaagcaggagaaggccaaccgcatcgtggccgag
gccatcgccagagcaaaggccagaggagagaggaacattccacgagtcctcaaccaggat
gaactgcctgctggacagaaggccgctgaccaaggggccgctgcaacgaccactggcaca
cctggagccaagaagaaggggggaggaggtgggagtaagaagaaaagcccaccagggggg
aagggcatggcttgtgctgagaagaaaggcaaggccaaggcagcaggtggagctgctgta
gggacacctgtaggggcgtctggaaccagcggcagcaaaagcaaggcaaagatcaatacg
atcactctagtggggggtaagaagaggaagaggaatgcctcctcagaccactctgatggg
gagttgagccctgcctctccgtctaaggccctggaggaggacatgctatcaaagaggcgc
tctaaccgccaggtgaaaaggaagaagtacacagaggatctggacatcaaaatcactgac
gacgaggatgagccagaggaggacgtggacgtaaccacgacggcagcggtgccgtctatt
accggaggagcagcagggcagctgatgggggagcagctcaaacaggagctgcagttggac
ggggacagcctttccagcatgcagttctttgtggaaaaccccaacgaggaagatgcagca
attgtagacaaagttttgtccatgaggttaactaaaaaagaggtgtctccaggacagtat
ataaatgctgaggaattctttgtcaaatataagaactactcctacatgcactgtgagtgg
gccactctgcagcagctggagagagacaagaggatccatcagaagctgaagagattcaag
atcaaacatgcacaaatgagactcctcttacaggaggaggaggagcccttcaacccagac
tatgtggaggtggaccggatcctggacgagtccaacagtgtggacaaggacaatggagag
ccagtggtgtattacttggtgaagtggtgctctctgccctatgaagacgccacctgggag
ctgagggaggatgtggatgcggacaaggtggaggagtttaggaagatccaggaccgccaa
cctcagctcaagagaacgccccgaccccaagcggctgcatggaagaagctggaggaattc
cgagagtacaagagtgggaacgtactccgagaataccagctagaaggagtcaactggctg
ctcttcaactggtacaacaggcagaactgtatcctggccgatgagatgggtctagggaag
accatccagtccatctctctgctgtccgaggtgtttggtgccggtgtccagggccccttc
ctggtcatcgcccccctctccaccatcaccaactgggagagggagttcgccacctggacc
gacatgaatgccatcgtctaccacggcagcctggccagcaggcagatgatccagcagtat
gagatgtactgcaaggatgacaaggaccatctgatcccaggggcatataaatttgatgcc
ctgatcacaacgtttgaaatgattctttccgactgccctgagctgagggagatctcctgg
cgctgtgtgatcattgacgaagctcaccgcctcaagaaccgcaactgcaagctgctggac
agcctcaagatgctggacctggagcataaggtgcttctgacaggcactcccctccagaac
acagtggaggagctcttcagtctgctgcatttccttgagccagctcagttctcctcagag
tcagagttcctacgtgactttggagacctcaaaacagaggagcaggtccagaagctccaa
gctattctgaagcctatgatgctgcgcagactcaaagaggatgtggagaagaacttggcg
ccaaaacaagagaccatcattgaggtggagctgacagatgtgcagaagaaatactaccgg
gccatcctagagaggaactttagtttcctcagcatgggagccaccagcaacagtaacgtc
cccaatctgctcaacaccatgatggagctacgcaagtgctgcaaccacccctacctcatc
acaggggcggaggagtctattgtggctgagttgagggaggtgtacgaccccatggtccca
gacttccacctgcaggccctggtgagatctgcaggcaagctggtcttgctggacaaactg
ctgcctcgcctgaaggccgggggacacaaggtgctcatcttctcccagatggtgcgctgc
ctggatatcctggaggactacctcatcaacaagagatacctgtacgagcgtattgatggc
agagtgagagggaacctgcgtcaggcagccattgatcgcttcagcaaaccagactcggac
cgtttcgtcttcctgctgtgtacccgggctggaggcctgggcatcaacctgactgctgct
gacacctgcgtcatctttgactccgactggaaccctcagaatgatctgcaggctcaggcg
cggtgtcaccgtatcggccagtccaaggcggtgaaggtgtaccgtctgatcaccaggaac
tcctatgagagggagatgttggacaaggctagcctcaaactgggtctggaccgggctgta
ctgcagagcatgagcagcaacaaggagagcaatgtcaacggacaaatccaacagttctcc
aagaaggagatcgaggaccttctgaggaagggggcgtacgctgccatcatggacgaggag
gacgagggctccaagttctgcgaggaggacattgaccagatcctccaaaggagagccacc
accatcaccattgaaagcgagggcaagggctccaccttctccaaggccagcttcgtggcc
accgagaacaggaccgacatcgccctggatgaccccgagttctggcagaagtgggccaag
agggcagacatagactttgattccatgaataggaagaacactctcgtgattgacacaccc
agggtgaggaaacagacccgtcagttcgctaccctgaggggcgagggcggggagatctct
gaccccgacagcgacgacgagtatccgcccgccaattcccggcagtcccggtcctcaagg
cgatccgagcgccacactggaaatggctacggccgcaccgactgcttccgtgtggagaaa
cacctgcttgtttacgggtgggggcgctggagggacatcctgtctcatgcacgctgtaag
cggcgcctcggggagcatgacgtggagaccatctgcagggtcattctggtcttctgcctg
ctgcattaccgtggcgacgagaacatcaagagcttcatctgggagctcattaccccccca
gagaacggccgggaaccacacacactcctcaaccactctggtctctccatccctgttcct
cggggcaggaaggggaagagggtgaaggcccagagctcctttgacgttcagaaggtggag
tggatccacaagtacaaccctgactccctgcttctggacgacagctaccgcaaacatctc
aagcaccagtgcaacaaggtgttgctgagagtgcgtatgctgtactacctgagacaggaa
gtcattggagaacatgccgattctgtgctgagaggagccgatgccagggatattgacatc
tggatgcctgagatggagcaacaggaggtgccatcaggctggtgggatacagaggcagac
cgctccctcctcgtcggtgtcttcaaacacgggtatgagatgtacaccaccatgcgtgct
gacgcatgtctgtgtttcctggagcgagctggtcgccctgacgatcaggccattgatgca
gagcagcactctgcagacgcagagctgggagatggaggagacgatgacaagtattctgaa
gacccagagttcaagcctgcgtcaaggcacaccaaagatctatacgaggaggctgactcc
atgaacatgggtgatgatatctgtgtcgaggacaaggcagggcctgttaaaaccaagggg
ccgcctcctggccagtcaggagcctgtgagtggccgaccagctcgtcacttaccgcgcgg
ctccggcgtctgatcactgcataccagcgcagctacaagagagagcagctgaaggtggag
gcagcagagaagggggaccgcaagcgcaggaggtgtgaacaggccagtaagctgaaggag
attgcacgccaggaacgccaacagaggtaccaactactaccctcaactattaactctgca
agcatatgtgtcctgaatctgaggtggacccgtagagaggagtgtgatttctaccgtgtg
gtgtccacgttcggtgtggagcggataaagaaagaggttaacgctcaagagggggaggag
gctgaactggactgggcccgcttccggaccttcgcccgtctggacaagaagacggacgag
agtctgagccgctacttccgctgcttcatggccatgtgcaggagggtgtgcaacctgcgc
cccacccgcggagaagacccgtcagagctggggcagtctatggcccccatcaccgaggag
cgggcctctcgcaccctgtaccgcatcagcctgctgcgccgtcttcgtgagcgtgtcctg
ccccacccctccatggaggagcgcctgctgctggccccactaagctccgagcttcccgcc
tggtggagcactccagcccacgaccgggaactcatgctgggcgccgccttccacggcgtc
agccgcaccgagctctcagtcttctccgacccacagttctccttcagccaggcccgccac
gactacctcgagatccagcccgcccctgccactcccctccgccaaccacaggcagaggag
ggctccgccgtcgaggaggaggaggggctgaacagggagtccggcctccttggagcctct
gaggctctcggccactcagatactcagaccacacccctctctcgccctgatgggaagggc
cgagcccggaccggcttgggctggaagaagagcagggggaggggcccgagaagcggagga
aggaaaggcggaagaagtggaggagaaggagggatgtctgattcggattcagactctgat
tcaggctcgtctacctcctcccagcgatcaggcagctctgacgacagtggggacagtgat
gcagaaagggagagagctgctctgaagatggaggaagacggagagaacagcttgctctca
atgactccatctcaagatggtgcgccaccggagtccctcactgaccccttcagggttgac
tggcccaaggaccgtgtgttgataaaccggctggaaagcctctgtacgctggtgctgtct
gggcagtggccaacagggcggcgctacgcctccgacgcccagctaaacccaggctctgac
gacctagggacaggggatgagctcagctttgcacggctcatgcggaaaggcaacagcaca
cccggtggagaaggagcagacggaggggaatctgagttcactgtcaaactcctgaaggag
gaggggctgaagctgaccttctctaagcatgccttgatgtccaacgggtcagggggagag
gggagcggacgcaggaagcgtagggaccaagaattgtcagatccagacggagcagtcccg
gtggttgatgccatgacaggcacagtgctgagtggggagcgggcccctcgacgcagggac
ttgcccaactggctgaaggagaacccagactatgaggtggcgggagacatgctggagctc
cttgggaacagaagcaagaggaaaaggaagaggacggagaaggcagtagcactgtcgggc
agtgagaagattaagatcattgatatgaggacaggaaagaaggttggggctgcgcatgga
cctatgctgcaggatttgagggagtttctggaggagaatgctgactgtgcagttgcacca
gaatgggctgagactgtccggagctctggctttctgccagacagcctcttccaccggcta
ctctcagcacactctgtcatccccaagagagaccgtcaccgccaccaccacactccccag
cctgccccgcaggaggacccactcctgggcggaggtgaagaagagaccctggtctcagat
ggggcctatatgatggaggacgaagatttggaggattcttctttcctgactcaagccttt
gatgttaagatggaaggtggcgacagcttgtcacaaggcggatatgagagttctgacagg
gaggcccttttggacgacgtcattatggcacagaaggactcggactcttcctccagctca
gaggattga
DBGET
integrated database retrieval system
