Coregonus clupeaformis (lake whitefish): 121581177
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Entry
121581177 CDS
T08357
Name
(RefSeq) dynein, cytoplasmic 1, intermediate chain 2a-like isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145
Phagosome
cclu04814
Motor proteins
cclu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121581177
09142 Cell motility
04814 Motor proteins
121581177
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121581177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121581177
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121581177
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
121581177
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
121581177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Dynein_IC2
Beta-prop_EML
WD40_WDHD1_1st
WDR55
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_NUP159_NUP214
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Nbas_N
Beta-prop_SPT8
Beta-prop_IP5PC_F
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_WDR11_1st
CAF1A_acidic
Motif
Other DBs
NCBI-GeneID:
121581177
NCBI-ProteinID:
XP_041752533
LinkDB
All DBs
Position
14:complement(15570119..15590795)
Genome browser
AA seq
640 aa
AA seq
DB search
MADKQDKSELKAELERKKQRLAQIREEKKRKEEENNKKKDGSDSKWGGEGGGVGAPDDSS
DLEKKRREAEALLESMGITSDIPNVPTPMSPSAKSVGSESRSQDSGDGNTRTLHWDPDPS
TLQLHSDFELLGRGLRLGMAKVTQVDFPPKEMVSYSKETQTPADTPTHTQAKPAEEEDEE
EMVDPKPAEDTQEEEADQEEKQEEAPPKELTEEEKMHLLHSEEFMTFFDRGSRIVERALS
ERVDVCFDYSGRDLEDKEREMQAGAKMSLSRVFSDERWSKNRVVTCLDWSPQYPELLVAS
YNNNEDAPHEPDGVALVWNMKYKNTTPEYTFHCQSAVMSAAFARFHPNLIVGGTYSGQIV
LWDNRSNKRTSVQRTPLSASAHTHPVNCVNMVGTQNAHNLISISTDGKMCSWSLDMLSQP
QDSLELVFKQSKAVAVTSMAFPLGDVNNFVVGSEDGSVYTACRHGSKAGISEVFEGHHGP
VTGLSCHSAGGPVDFSQLFISASFDWTVKLWTTKSTRPLYSFEDSCDYVYDVMWSPTHPA
LFACVDGSGRLDLWNLNDDTEVPSASVVVDGCPALNRVRWSHSGREIATGDSDGQVLVYD
VGEQIFVPKADEWTHFMHTLVEINENRDEGDELAAQRLVA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggcggataagcaggataagagtgagctgaaagcagagctggagaggaagaaacagcgc
ctggcccagatcagagaggaaaagaagagaaaggaggaagagaataacaagaagaaggat
gggtctgactctaagtggggaggggaggggggtggagttggtgcaccagatgactcttct
gacctggagaagaagaggagagaggctgaggctctgctggagagcatggggatcacctct
gatatacccaacgtccctacccctatgtctccttcagccaagtcagtgggcagcgagtct
agaagccaggactccggagatggaaacaccaggacgttacactgggatcctgacccctct
actctgcagctgcactctgactttgaactactggggcgaggtttgaggcttggcatggca
aaggtgacccaggtggatttccccccaaaagagatggtgtcctactccaaggagacacag
acccccgctgatacaccaacacacacccaggctaaaccagcagaagaggaagatgaggaa
gagatggtcgatcccaagccagcagaggacacccaggaggaggaagctgatcaggaggag
aagcaggaagaagcccctcccaaggagctgactgaagaggagaagatgcacctgctccac
tctgaggagttcatgacgttcttcgatcgagggagcaggattgtagagcgggctctctct
gaacgagtggacgtctgcttcgactacagtggccgagacctggaggacaaggagcgtgag
atgcaggcgggcgctaagatgtctctcagtagggtgttctctgacgagcgctggtccaag
aacagagtggtcacctgtctggactggtctcctcagtaccctgagctgctggtggcctcc
tacaacaacaatgaagatgctcctcatgagccggacggagtggctctggtctggaatatg
aagtataagaataccacacccgaatacaccttccactgccagtctgcggtgatgtcagcg
gcgttcgccaggttccatcctaacctgattgtgggtgggacttactcaggccagatcgtc
ctatgggacaacaggagcaacaaaagaacatctgtacagagaactcccctgtctgcatcc
gctcacacgcacccggtgaactgtgtgaacatggtcgggacccaaaacgctcacaacctc
atcagcatttctactgacggaaagatgtgttcttggagcctagacatgctgtctcaacca
caggacagcctggagctggtgtttaagcagtctaaggcagtagcagtgacctcaatggcg
tttcctctgggtgacgtcaataacttcgtagtcgggagtgaagatggatcagtctacacc
gcctgccgccacgggagtaaggcaggcatcagtgaggtgtttgaggggcaccatggtcca
gtcactgggctgagctgtcacagtgctgggggtcctgtggatttctcccagctcttcatc
tctgcctccttcgactggaccgttaagctctggaccaccaagagtacccgtcctctgtat
tcgtttgaggacagctgtgactatgtgtatgatgtcatgtggtctcccactcaccctgcc
ctcttcgcctgtgtggacggatcaggacggctggacctgtggaacctcaacgacgacaca
gaggtgcccagtgccagtgtggttgtggatgggtgtcctgctctgaaccgtgtgcggtgg
tctcactcagggagagagatcgctacaggagactcagacgggcaggtgctggtctacgac
gtaggagagcagatctttgtgcccaaggcagatgagtggacccatttcatgcacacgctc
gtggagatcaacgagaaccgagacgaaggagatgagctcgccgcgcagcgcctagtcgcc
tga
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