Coregonus clupeaformis (lake whitefish): 121581188
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Entry
121581188 CDS
T08357
Name
(RefSeq) nuclear receptor ROR-beta
KO
K08533
RAR-related orphan receptor beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121581188
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121581188
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121581188
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121581188
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
121581188
NCBI-ProteinID:
XP_041752568
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Position
14:16288457..16304310
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AA seq
503 aa
AA seq
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MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTSRN
RCQHCRLQKCLVLGMSRDAVKFGRMSKKQRDSLYAEVQKHKKNQECLNQGLSLSREDVAG
GESEWDGHGELSRSYSSGGSTSTLSDLDDIAALPELFDLPLTPQEAHEYCSLELQEDHGG
STGNTSNSSSSSSSSPISSNQNSPQQNLLDVTDANGIKHEYQMLSLTHTLLAHTHATLLE
PLPDDCPLMDIERITQSVVKSHLETSQYSSDDLKRLTYNGMQYSPEETRNFQCESAESVW
QQCAHHITNSIQYVVEFAKRITGFMDLCQNDQIILLKAGCLEVLLIRMCRAFNATTNTMF
FDGKFASAQLFKALGCDDLVSAVFDLAKGLSRLQLTDEEMALFSAACLLSPDRPWLTDSQ
KVQKLQAKVYLALQHSLHMSGAADEKLDQMVSKLPMMKSICNLHIDKLEFFRLVHPETAY
SFPPLYREVFGSEISLPDSTNNS
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaatagaagtaataccctgcaagatctgtggggacaagtcctcaggaatc
cactatggagtcattacctgtgaaggctgcaaggggttcttccgccgcagccagcagaac
aatgccatgtactcgtgttcccgccagaggaactgtcttattgaccgaaccagccgcaac
cgctgccaacactgcagactgcagaagtgtctggtgttaggcatgagccgggacgccgtg
aagtttggccgtatgtctaagaagcagcgcgacagcctgtacgctgaggtccagaagcac
aagaagaaccaggagtgtctgaaccagggtctgtccctgtccagggaagacgtggctggg
ggagaaagcgagtgggacgggcacggggagctcagtcgctcctacagcagcgggggctcc
acctccaccctgagtgacctggatgacatcgcggcgctccccgaactgtttgatctgccc
ttgaccccacaggaggcccacgagtactgcagcctggagctgcaagaagaccacggcgga
agcactgggaacacctccaattcttcatcatcgtcatcatcctctcccatttcatccaat
cagaattctccccagcaaaatctactggatgtcaccgacgccaatgggatcaaacacgag
taccagatgttgtcactcacacacacgctcttggcgcacacacacgccacgctgctagag
ccactgcctgatgactgccctcttatggatatagagcgtatcacccagagtgtggtcaag
tctcacttggagacgagtcagtacagctctgatgacctgaagaggctgacatacaatggg
atgcagtactcacctgaggagacccgcaacttccagtgcgagtctgcagagtctgtgtgg
cagcaatgtgcccaccacatcaccaattccatccagtacgtggtggagtttgccaaacgc
attacaggcttcatggacctgtgtcagaatgaccagatcattctgctcaaagcaggctgt
ctggaggtgctgttgataaggatgtgcagggcgtttaacgccaccacaaacaccatgttc
tttgatggcaaatttgcctccgctcagctcttcaaagccctcggttgcgatgacctggtc
agtgccgtgtttgacctggctaaaggtctctcccgcctgcagctgaccgatgaggagatg
gctctgttcagcgccgcttgcctgctgtccccagaccgaccatggctaaccgacagccag
aaggtccagaagctacaggcgaaggtctacctggctctgcaacacagtctgcacatgagc
ggggctgctgacgagaaactagaccagatggtgtccaagctgccaatgatgaagtccatc
tgtaatctccacatcgacaagctggagttctttcgtctggtccaccccgagaccgcatac
agcttcccaccactctaccgggaagtgtttgggagtgagatctctctccccgactctaca
aacaactcctag
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