Coregonus clupeaformis (lake whitefish): 121581244
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Entry
121581244 CDS
T08357
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2 isoform X1
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
121581244
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121581244
Transporters [BR:
cclu02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
121581244
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Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
121581244
NCBI-ProteinID:
XP_041752671
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Position
14
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AA seq
620 aa
AA seq
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MNVKAGLSNGKNSSRLKDLVPVPQPQSEEKMQERGQWSNKLEFILSVMGSIIGLGNMWRF
PYLCYKNGGGAFLIPYLIFLFTCGIPVFFLETALGQYTSEGGITCWRKISPLFEGLGYGT
QVIVALLNSYYIVVLAWGIFYLSFSFSWELPWSSCNNTWNTENCVEFQRRNYSVNYTLPE
NSTSPVIEFWERRALRLSSGIDHMGSLNWDLALCLAIAWVMCYFCIWKGVKSTGKVVYFT
ATFPYLMLIVLLIRGVTLPGADLGIKFYLYPDLSRLADPQVWMDAGTQIFFSYAICLGSL
IALGSYNKYNNNCYKDCLALCFLNSGTSFVAGFAIFSILGFMAYEQDVPISEVAESGPGL
AFIAYPRAVAMMPFSSLWAVFFFIMIILLGLDSQFVCVESLTTAMVDMYPEVFRRKNRRE
LFLALVAFISFLMGLVMLMEGGVYVFQLMDYYAASGMCLLFMAIFETVSIAWVYGVDRFY
DNIEDMIGYRPGPYIKYCWLYVTPATCIATFAFSLIKYTPLKYNNEYVYPWWGYVIGWLL
ALASMVCIPLWIIYKLATTEGTLRERIHILLQPSNDLPKTKREQERMLATFAPKGEGGME
PVGVPNKDGYLPVGVKDSNC
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttaaagcaggcctctcaaatggcaagaacagcagcaggctgaaggacctggtc
cctgtccctcagccccagtcagaggagaagatgcaggagaggggccaatggagcaacaaa
ctggagttcatcctgtctgtgatgggatccatcatcggcctggggaacatgtggcgcttt
ccttacctctgctacaagaatggaggaggtgcatttctcatcccctacctgatcttcctg
ttcacctgtggcatacctgtgttcttcctggagactgctctgggccagtacaccagcgag
ggaggcatcacctgctggaggaagatcagtccactgtttgagggtcttggctatggtacc
caggtcatcgtggctctgctgaactcctactacatcgtggtcctggcttggggaatcttc
tacctgtctttctccttctcctgggaactcccttggtcctcctgcaacaacacctggaat
acagaaaattgcgtggagtttcagaggaggaactattctgtcaactacaccttgcccgaa
aactccacttcccccgtcattgaattctgggagagaagagccttgaggctgtcgtccggc
atcgaccacatgggctctctgaactgggacctggccctctgtctggccatcgcctgggtc
atgtgttacttctgcatctggaaaggggtcaaatccactgggaaggtggtgtatttcaca
gctaccttcccctacctgatgctgatagttctgctgattcgaggagtcactttacctgga
gcggacctagggatcaagttctacctataccctgacctgtcaagactagcagaccctcag
gtatggatggatgcaggcactcagatcttcttctcctatgccatctgtctaggctccctc
atagcattggggagttacaacaagtacaacaacaactgctacaaagactgcctggccctg
tgcttcctgaacagtgggacaagctttgtggcaggctttgccatcttctccatccttggt
ttcatggcttatgaacaggatgtccccatctcagaagtagcagagtctggtcctggtctg
gccttcattgcgtaccctcgtgctgtggccatgatgccgttttcttcgctatgggccgtt
ttcttctttatcatgatcatcctgctagggttggacagtcaatttgtgtgtgtagagagc
ttgacaacggccatggtggacatgtaccccgaggtgttccgtcgtaagaaccgcagggag
ctctttctggctttagtggccttcatctccttcctcatgggcctggtcatgctgatggag
ggtggggtgtatgtgttccagctgatggactactatgctgctagtggcatgtgtcttctc
ttcatggccatctttgagacggtctccatcgcatgggtctatggtgtcgaccgcttctat
gataacatcgaagacatgattggctaccgtccaggaccttacattaaatactgctggctg
tatgtcaccccagccacatgcattgccacctttgcattctccctcatcaagtacacccct
ctgaagtacaacaatgagtatgtgtacccctggtggggctatgtgataggctggctcctg
gctcttgcctccatggtctgcatccctctctggattatctacaaactcgccaccacagaa
ggaacgctcagagagcgcattcacatcctcctccagccctctaacgacctacccaaaacc
aagagagaacaggagaggatgctggccaccttcgcccccaagggcgagggaggcatggag
ccagtaggggtaccaaacaaagatggctacctcccagtgggggtgaaggactcaaactgc
taa
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