Coregonus clupeaformis (lake whitefish): 121581379
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Entry
121581379 CDS
T08357
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03030
DNA replication
cclu03410
Base excision repair
cclu03420
Nucleotide excision repair
cclu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121581379 (lig1)
03410 Base excision repair
121581379 (lig1)
03420 Nucleotide excision repair
121581379 (lig1)
03430 Mismatch repair
121581379 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cclu03032
]
121581379 (lig1)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121581379 (lig1)
Enzymes [BR:
cclu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121581379 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
121581379 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
121581379 (lig1)
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
121581379 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
121581379 (lig1)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
121581379 (lig1)
NER (nucleotide excision repair)
Other NER factors
121581379 (lig1)
MMR (mismatch excision repair)
Other MMR factors
121581379 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PH_PLEKHM2
Motif
Other DBs
NCBI-GeneID:
121581379
NCBI-ProteinID:
XP_045080875
LinkDB
All DBs
Position
14:20065466..20114573
Genome browser
AA seq
987 aa
AA seq
DB search
MQDTGSLHTPEFPQETVPDGSGHPTLQCPTRAFFLPKTGKEKESKKSDGPVKEKPEPVKS
PLKVQNGVHNEPDSPVKQFRKHSRQILHSDDDEAPAVKEQAVKQEQDDKAVLPKKEKLPP
DSPTSTSPSGILKSRTARKQFPKRKLDSRSGSEEEEVKEEQGLQNKRARVDKTQDSTENE
EEAMQVGGEEKSVDKPKIAAEKTEQNETDEEKTKDDEKEKEIDVKETTTEKAEDDGKKLK
EEKEKGKSPKTQKKAVKDEKEIEDKVSQRPQAKKAPISSFFAPRKAAVKMEKPEEKSVEG
RRLSGEKKEEEEKVASITEVVKDKKGEKTDQAQYDPSRPNYHPVDHACWGWGQRVPYLAV
ARTFEKIEEDSGRLRNIETLSNLLRSVIILSPEDLLCCVYLCLNQLGPAYLGLELGVGET
VLMKAVGQATGRQLDKIKAEAAEKGDLGLVAESSRSNQRMMFQPANLTAGGVFNKLKDIG
NMSGNSELPAMNKKIDTIKGLFVACRFSEARYIVRSLVGKLRIGLAEQSVLAALSQAVCL
TPPGQDFPPAVIDAGKGMSAEKQKAWIEEKSLILKQTYCEMPNYDVIIPVLMKEGIDELP
KHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGDVHIFSR
NQEDNTSKYPDIISHISMVKKESVVSCVLDSEAVAWDREKQQIQPFQVLTTRKRKNVDAA
DIKVQVCVYAFDLLYLNGESLVKQPLSRRRALLKDSFEEKEGEFVFARAIDSDNTDTIAE
FLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKG
KRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLTEHILPKPRPYYRVDQS
TEPDVWLGAVQVWEVKCADLSLSPIYKAGMGLCDPEKGISLRFPRFLRIRDDKKPEDATS
GGQIADLYRKQQVVQNQGDKADLEDYY
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacacaggtagccttcacacgcctgaattcccccaggagacagtcccagatggc
tctggtcacccaaccttgcagtgccctacacgcgctttcttcctgcccaaaactggcaaa
gaaaaggaaagcaaaaagagtgatggaccagtgaaagagaaaccagaacctgtcaaaagt
cctctcaaagtgcagaatggagtccacaatgagcctgattcgccagtaaaacagttcagg
aaacacagtcgtcagatcctgcacagtgacgatgatgaggctccagctgtgaaagaacag
gcagtcaaacaggaacaagacgacaaggctgtcctgcccaagaaggaaaagctgccaccc
gacagtcccacgtccacctcaccctcaggaatactcaagagccggaccgcaaggaagcag
ttcccaaagagaaaactggacagcaggagtggcagtgaggaggaggaggtgaaggaggaa
caaggactgcagaataaaagagctagggttgacaaaacacaggacagcacagagaatgaa
gaggaagcaatgcaggtgggaggagaggaaaaaagtgtggataagcctaagatagcggcg
gaaaaaacggagcagaatgagacggatgaagagaagactaaagacgacgaaaaggagaaa
gaaattgatgtgaaagagaccacgaccgagaaggcagaggacgatggaaagaagttgaaa
gaggaaaaagagaaaggaaaaagtcctaaaactcaaaagaaggcggtaaaggatgagaaa
gaaattgaggacaaagtgtcacaaaggccccaagccaagaaagcccccatcagcagtttc
tttgctcccaggaaagcagctgtgaagatggaaaaaccagaggagaaaagcgtggaaggg
agaaggctgagcggggagaagaaggaggaagaggaaaaggtggccagtatcactgaggtt
gttaaagacaagaaaggagagaagacggaccaggcccagtacgacccgtccagacccaac
taccacccggtggaccacgcctgctgggggtggggacagagggtcccttatttagctgtt
gcacgtacctttgagaagattgaggaagactctggcagattgaggaacattgaaacatta
tcaaatcttctacgctctgtgatcatcctctctccagaggacctgctgtgctgtgtttac
ctgtgtctcaatcagttgggtcctgcttacctgggactggagctgggagtgggagaaact
gtactcatgaaagctgttggccaagcaactgggcgacagttggacaaaatcaaggcggag
gctgcagagaagggcgacttggggttggtggctgagagttcccgtagcaaccagagaatg
atgttccagccagccaatctgacggcagggggcgtgttcaacaaactgaaagacatcggg
aacatgagtgggaactctgagttgcctgccatgaataagaagattgacaccatcaaaggt
ctctttgtagcctgccgcttctctgaggccagatacattgtcaggtctctggtagggaag
ctgaggataggcttggctgagcagagtgtactggctgccctgagtcaggctgtgtgtctg
actcctccaggacaagacttccctccagcggtgatcgatgcagggaaaggaatgagtgca
gaaaaacagaaagcctggatagaggagaagagccttatccttaaacagacctactgtgag
atgcccaactatgatgtcatcatcccagtactgatgaaggagggcatagatgaactgccc
aaacactgcaaactcaccccaggtgtgccattgaggcccatgctggctcaccccaccaaa
ggtgtaggagaggtgatgaagaggttcgatgaagccgccttcacctgcgagtacaagtat
gatggagaaagagcacagatccatattctggagaacggggacgtgcatattttcagtcgc
aaccaggaagacaatacaagcaaatatcccgatatcatctctcacatttccatggtaaag
aaggagtctgtggtgtcctgtgtgcttgactctgaggctgtggcttgggacagagagaag
caacagatccagccattccaggtgctcaccacacggaagagaaagaacgtggatgcagct
gatatcaaggtccaagtgtgtgtgtacgcctttgacctgctgtatctcaacggagagtct
ctggtaaagcagcccctgtcccgtcgcagggctcttctgaaggatagcttcgaggagaag
gagggagagtttgtgttcgcccgcgctattgactcagacaacacagacaccatcgccgag
ttcctggagcagtctgttcgagactcctgtgagggactaatggtgaagactctggagaaa
gatgccacttatgaaatcgccaaacgctctcacaactggctcaagctgaagaaggactat
ctggatggggtgggggacacggtggatctgtgtgtgattggagcgtatctggggaagggc
aagagaaccgggacctatggaggcttcctgctcgcctgctacgatgaggacaatgaagag
ttccagtcagtctgcaagatcgggacaggtttcaaggatgaagatttggagcaacattac
aaattcttaacggagcacattttgcccaagccccgcccctattatcgtgtggaccaatca
acagagcccgatgtgtggctcggtgccgtgcaagtatgggaagtaaagtgtgccgaccta
tcgctgtcgccgatctacaaggctggcatgggattgtgtgacccagagaagggcatctct
cttcggttcccacgcttcctgaggatccgagatgataaaaagccagaggacgcaacttca
ggaggacagattgctgatttgtacaggaagcagcaggttgttcaaaaccagggagacaaa
gctgaccttgaggactactactga
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