Coregonus clupeaformis (lake whitefish): 121581452
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Entry
121581452 CDS
T08357
Name
(RefSeq) transcription factor Sox-14-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121581452
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121581452
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121581452
NCBI-ProteinID:
XP_041752883
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Position
14:10681979..10684344
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AA seq
244 aa
AA seq
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MLMRISPCALEMAKPLDHIKRPMNAFMVWSRGQRRKMSLENPKMHNSEISKRLGAEWKLL
SESEKRPYIDEAKRLRAQHMKDHPNYKYRPRRKPKSLLKKDRFLFPFPFLGDAEHLKGFS
TESILASAEKARALLPPTSSPYSLLDPGQFSTGAVQRISEIPHALAANGLSYAPSLGYQT
GAFGSLGCPSQHTHTHPSPTNPGYALPCNCGTWSATGLQPQVAYILFPGMTGIDPYSCSP
HSSV
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgttgatgcgcatttcaccgtgtgctcttgagatggcaaaacctttggatcacataaag
aggcccatgaacgctttcatggtgtggtctcgcggtcagagacgaaagatgtcactggag
aatcccaaaatgcacaactctgaaatcagcaaaagacttggcgcggagtggaagttgctt
tccgaatcagagaagcgaccatacattgatgaagccaagagattgcgtgcgcaacacatg
aaagatcaccccaactacaagtacagaccccggcgcaaacccaagagcttgctaaagaag
gaccgtttccttttcccctttcccttcctcggggacgcagaacatttgaaaggattttcc
accgagtccattttggcttccgctgagaaagctagggcccttttgccgccgacgtcgtca
ccatactcgctccttgaccctggtcaattcagcaccggcgctgtccagaggatctctgaa
attccccacgcgctggctgcaaacggcttgtcctatgcgccctctttgggataccagact
ggcgcgtttggaagtttgggatgccccagccagcacactcacactcacccgtcccccacg
aacccggggtacgccttgccctgtaactgtggcacgtggtcggcgacgggtttacagcct
caagttgcatacatccttttcccaggtatgaccggcatagacccgtactcctgttcacca
cattcaagtgtgtga
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