Coregonus clupeaformis (lake whitefish): 121581969
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Entry
121581969 CDS
T08357
Name
(RefSeq) endothelial PAS domain-containing protein 1-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137
Mitophagy - animal
cclu04140
Autophagy - animal
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121581969
04137 Mitophagy - animal
121581969
04148 Efferocytosis
121581969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121581969
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
121581969
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Motif
Pfam:
PAS_11
PAS_3
PAS
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
121581969
NCBI-ProteinID:
XP_041753356
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Position
1:12225056..12229993
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AA seq
242 aa
AA seq
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MIYLSDNIREYMGLTQVELMGHSIYDFTHPCDHKDIRDNLDITGVPGRSRCGGQRDFLMR
MKSTVTHRGRTVNLRSAVWRVLQVCVSRPSLSCVLFTCQPLSLSHTLLHTHTFTSQHSMD
MRFTYCDQRVTGFLSYHPEELLGVSVYELCHTLDLHTLTKSHQNLCSKGQSVSGVYRVLV
RGGGYMWAETHSAVISKPRPTQPHPSKPHPSKLSPPPFVACVTYILSGVKEPTQLLSLGQ
MN
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgatctacctgtcagataacatcagagaatacatgggcctaactcaggtggagttgatg
gggcatagcatatatgatttcacacacccctgtgaccataaggacatcagagacaacctt
gacatcactggagttccagggcggagcaggtgtggaggacagagagactttctgatgagg
atgaagagtacagtgactcacagaggaagaactgttaatctccgatcagccgtctggagg
gtgctgcaggtgtgtgtgtccagaccctctctttcctgtgtgctcttcacctgccagccc
ctctccctctctcacacactcctacacacacacaccttcaccagccaacacagcatggac
atgaggttcacctactgtgaccaaagggtgactgggtttttaagttatcatccagaggag
ctgctgggtgtctctgtgtatgagctgtgtcacactctggacttacacactctgaccaag
agccaccagaacctgtgttctaagggtcagtcagtgagtggggtgtacagggtgttggtg
agagggggagggtacatgtgggcggagactcacagtgctgtcatctctaaaccccgccca
acacagccacacccatcaaagccacacccatctaagctctcaccaccacccttcgttgct
tgtgtcacctacatcctcagtggtgtcaaggagccaactcagctgctgtctctgggccag
atgaactga
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