Coregonus clupeaformis (lake whitefish): 121582062
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Entry
121582062 CDS
T08357
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
cclu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121582062
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121582062
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121582062
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121582062
03036 Chromosome and associated proteins [BR:
cclu03036
]
121582062
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121582062
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121582062
SWI/SNF complex
121582062
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121582062
PBAF complex
121582062
SWI/SNF complex
121582062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
121582062
NCBI-ProteinID:
XP_041753518
LinkDB
All DBs
Position
15:complement(6184324..6198866)
Genome browser
AA seq
409 aa
AA seq
DB search
MRCGALLLLATLAQLLATVKMALSKTFGQKPIKFQLEQDGDFYMVGSEVGNYLRMFRGSL
YKRYPSLSRRLASVEERKKIVASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAY
LREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHEN
ASQAEVLVPIRLDMEIDGQKLRDAFTWNMNGTAPLSIPRVEDCFGATKSKKLMTPEMFAE
ILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILDEQTDQRVIIKLNIHVGNISLVDQFE
WDMSERENSPETFALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFRSDFSENPLPTV
EIAIRNTGDADTWCPLLETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgtggagctttgttactgttagctactttggcccagttactagctactgtaaaa
atggcgttaagcaaaacctttgggcagaaaccgataaaatttcagttagagcaagatgga
gacttttacatggttggatcagaggttggaaactacctgcgtatgttcaggggctccctg
tataaaaggtacccatcactctcgaggaggttagcctccgtagaggagaggaagaaaatt
gtagcatcatctcacgccacaagtgtgactctgctgaaggcatccgaatgtgaagagatc
ttcgaggggaacgatgagaagtacaaagctgtttctatcagcacagagccaccggcctac
ctcagggagcagaaggcgaagaggaacagccagtgggtccccacgctgcccaacagctcc
caccacctggacgccgttccctgctccaccaccatcaaccgcaaccgcatgggccgcgac
aagaagaggaccttccccctgtgctttgacgaccacgacccggcggtgatccacgagaac
gcgtctcaggccgaggtgctagttcccatccgtctggacatggagattgacgggcagaag
ctcagagatgcgttcacctggaacatgaacggtactgctccactctccatcccccgggtg
gaagactgctttggagcgacaaagtccaagaagctgatgaccccggagatgtttgcagag
atcctgtgtgacgacctggacctaaaccccctggcctttgtcccggccattgcctcagcc
atccgccagcagatagagtcctaccccacagacagcatcctggacgagcagaccgaccag
agggtcatcatcaagctgaatatccacgtggggaacatctccctggtggaccagtttgag
tgggacatgtcggagagggaaaactctccggagacgtttgccctcaagctgtgctccgag
ctgggcctgggaggagagtttgtcaccaccatcgcctatagcatccgcggccagctcagc
tggcaccagaggacgtacgccttcaggtctgatttcagtgagaatcccctgcctacggtg
gagatcgctatccgcaacacaggtgacgccgacacgtggtgccccctactggagaccctg
acggacgcagagatggagaagaagatcagggaccaggacaggaacaccaggcgcatgaga
cgacttgccaacactgcccctgcctggtag
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integrated database retrieval system
