Coregonus clupeaformis (lake whitefish): 121582068
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Entry
121582068 CDS
T08357
Symbol
sptan1
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1 isoform X2
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04210
Apoptosis
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
121582068 (sptan1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121582068 (sptan1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121582068 (sptan1)
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121582068 (sptan1)
Intermediate filaments
Intermediate filament-binding proteins
121582068 (sptan1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_1
EF-hand_7
EF-hand_6
SH3_2
EF-hand_8
SH3_3
SH3_10
SCO1-SenC
Motif
Other DBs
NCBI-GeneID:
121582068
NCBI-ProteinID:
XP_041753530
LinkDB
All DBs
Position
15:complement(6032375..6082025)
Genome browser
AA seq
2474 aa
AA seq
DB search
MDTSGVKVLESADDIQERRQQVLDRYRRFKELSGVRRQKLEDSYRFQFFRRDADELEKWI
QEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANAGAIIKLDETGNLMISEGHFASETI
RTRLEELHRLWDLLLLKTKEKGVRLLQAQKLVQYLRECEDALDWISDKEAMATSEELGQD
LEHVEVLQKKFEEFQTDLAAHEERVNEVNQLAGKLSQESHPEAELIIRKQEEVNAAWQRL
KGLAQQRQGRLFGAAEVQRFNRDVDETISWIKEKEQLMASDDFGRDLASVQALLRKHEGL
ERDLAALEDKVNTLGGEAERLQQTHPQNASQIHMKRDELITNWEQIRTLAAERHARLNDS
YRLQRYTSDFRDLTSWVTEMKALINADELANDVAGAEALLDRHQEHKGEIDAHEDSFKAT
DEAGQALLNTGHYASEEVKEKLGVLTEEKESLLELWEVRRQQYEQCMDLQLFYRDTEQVD
NWMSKQEAFLLNEDLGDSLDSVEALLKKHEDFEKSLSAQEEKITALDEFATKLIQNNHYA
KEDVATRRDALLSRRNALHERAQSRRAALEDSFHLQQFSRDSDELKSWINEKMKTATDEA
YKDPSNLQGKVQKHQAFEAELSANQSRIDALQKSGQELLDGKHYAADEVSVRMDEVSSQW
KKLLEATELKGIKLREANQQQQFNRNVEDIELWLYEVEGHLASDDYGKDLTSVQNLQKKH
ALLEADVVAHQDRIDGITIQARQFQEAGHFDADNIKRKQEALVARYDALRDPMAARKQKL
SDSLRLQQLFRDVEDEETWIREKEPIAASTNRGKDLIGVQNLLKKHQALQAEIAGHEPRI
KAVTQKGEAMVEEGHFAREEVKVKLEELNGRWDTLKGKAGQRRQDLEDSLQAQQYFADAN
EAESWMREKEPIVGSPDYGKDEDSAEALLKKHEALMSDLSAYGSSIQALKEQAQTCRQQV
APTDDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY
VKKLDPTQSSSRENLLDEQGSIGLRQDQIENQPLAKEACSVSVRMKQVEELYGTLQELGE
KRKDMLEKSCKKFMLFREANELQQWINEKEGALTNEEVGSDLEQVEVLQKKFDDFQKDLK
ANESRLRDINKVASELESEGLMAEEATMVQAQEQVMLGSAPGQDEADNKNASPWKNVRLA
VQTTANFNTIKELNNRWRSLQQLAEERSNMLGSAHEVQRFHRDADETKEWIEEKNQALNT
DNYGHDLASVQALQRKHEGFERDLAALGDKVNSLGETAERLIQSHPEAVDDIQEKCTELN
TAWSSLVGRADQRKDKLGNSHDLQRFLSDFRDLMSWINGIRGLVSSEELAKDVTGAEALL
ERHQEHRTEIDARAGTFQAFEQFGQQLLGRGHYASPEIQQKLEALDRERADLEKAWVQRR
MMLDQCLELQLFNRDCEQAENWMAAREAFLASDDKGDSLDSVEALIKKHEDFDKAINVQE
EKIAALQSFADQLVGADHYAKPEIFNRRNEVLDRWRHLKAQMIEKRSKLGESQTLQQFSR
DVDEIEAWISEKLQTATDESYKDPTNIQSKHQKHQAFEAELHANADRIRGVIDTGNALIH
RGACSGSEDAVQSRLGALDEQWQFLVNKSAEKSQKLKEANKQQNFNTGIKDFDFWLSEVE
ALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNGQADSLTASTAFDPTQVKDK
RDAVNGRFAKIKSMAAGRRAKLNESHRLHQFFRDLDDEESWIKEKKLLVSSEDYGRDLTG
VQNLRKKHKRLEAELGAHEPAIQSVQDTGKKLSDDNTIGQEEIEQRLGQFEEHWTELKDL
AAARGQRLEESLEYQQFVANVEEEEAWINEKLNLVGSEDYGDTLAAVQGLLKKHEAFETD
FSVHRDRVNDVCSNGDELIKKNNHHVDSISAKMVSLRGKVSELERAAAMRKAKLDENSAF
LQFNWKADVVESWIGEKENSLKTDDYGRDLSSVQTLLTKQETFDAGLQAFQQEGITNITA
LKDQLLAAKHVQSKAIEARHAALMKRWNQLLDNSQARKKKLLEAQEHFRKVEDLFLTFAK
KASAFNSWFENAEEDLTDPVRCNSLEEIRALRDAHEAFRSSLSSAQADFNQLAELDRQIK
SYQVVSNPYTWFTMEALEETWRNLQKIIKERELELQKEQRRQEENDKLRQEFAQHANAFH
QWLQETRTYLLDGSCMVEESGTLESQLEATKRKHQEIRAMRSQLKKIEDLGAAMEEALIL
DNKYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNTTGVTEDALKEFSMMFKHFDKE
KSGRLNHQEFKSCLRSLGYDLPMVEEGEPDPEFESILDTVDPNRDGNVSLQEYMAFMISR
ETENVKSSEEIESAFRALSVDAKPYVTKEELYQNLSKEQADYCISHMKPYLDSKGREMPS
AFDFVEFTRSLFVN
NT seq
7425 nt
NT seq
+upstream
nt +downstream
nt
atggataccagtggggtgaaagtgcttgagtctgcagatgacatccaggagcgccggcag
caggtgttggaccgctaccggcgcttcaaggagctgtcgggcgtgcgccggcagaagctg
gaggactcgtaccgcttccagttcttccgccgcgatgctgacgagctggagaagtggatc
caggagaagctgcagatcgcctctgatgagaactacaaggaccctaccaacctccagggc
aagctccagaaacatcaggccttcgaggctgaggtgcaggccaacgctggagccatcatt
aagctggacgagactggcaacctcatgatctccgaaggccactttgcctccgaaaccatc
cgcactcgtctggaggagctgcaccgtctttgggacctgctgctgctgaagaccaaggag
aagggtgttcgtctgctgcaggcccagaagctggtgcagtacctgcgcgagtgtgaggat
gccctggactggatcagtgacaaggaggccatggccacctcggaggagctgggccaggac
ctggagcacgtagaggtgctccagaagaagtttgaggagttccagacggatctggcagcc
catgaggagcgcgtgaacgaggtgaaccagctggcgggcaagctgagccaggagtcccac
cccgaggcggagctcatcattcgcaagcaggaggaggtgaacgccgcctggcagaggctc
aagggcctggcgcagcagaggcagggcaggctgttcggagccgccgaggtgcagcgattt
aacagggatgtggacgagaccatcagctggatcaaggagaaggagcagctcatggcatcc
gatgactttggccgggacctggccagcgttcaggccctgctgcgcaagcacgagggcctg
gagagagacctggctgccctggaggacaaggtcaacactctgggcggagaggctgaacgt
ctgcagcagacccacccccagaatgcctcccagatccacatgaagagggacgagctcatc
accaactgggagcagatccgcacgctggccgccgagcgccacgcccgcctcaatgactcc
tacaggctgcagcgctacacttcagacttccgtgacctgaccagctgggtgacggagatg
aaggccctgatcaacgctgatgagctggccaacgacgtggctggagctgaggctcttctc
gaccgtcaccaggaacacaagggtgagattgatgcccatgaggacagcttcaaagccacg
gacgaggccggccaggctctgctcaacaccggacactacgcctcagaggaggtcaaggag
aagctgggtgtcctgactgaggagaaggagtctctgctggagctgtgggaggtgcgcagg
cagcagtacgagcagtgcatggacctgcagctcttctacagggacacggagcaggtcgac
aactggatgagcaagcaagaggcgttccttctgaacgaggaccttggtgactctctggat
agcgtggaggccctgctgaagaaacacgaggactttgagaagtccctcagcgcccaggag
gagaagatcactgccctggatgaatttgccaccaaactgatccagaacaaccactatgcc
aaggaggatgtggccactcgtagagatgctctgctgagccgccgtaacgccctgcatgag
cgtgcccagtcccgccgcgccgccctggaggactccttccacctgcagcagttctcccgc
gactcggacgagctcaagagctggatcaacgagaagatgaagacggctaccgacgaagcc
tacaaggacccgtccaacctgcagggcaaggtccagaaacaccaggccttcgaggcggag
ctgtcagccaaccagagccgcatcgatgcgctgcagaagtctggacaggagctcctggac
ggcaagcactacgccgccgacgaagtgtcggtccgcatggacgaggtcagctcccagtgg
aagaagctgctggaggccaccgagctcaaaggcatcaagctgcgtgaggccaaccagcag
cagcagtttaacaggaatgtggaggacattgagctgtggctgtacgaggtggagggccac
ctggcctccgacgactacggcaaggacctgaccagtgtccagaacctgcagaagaaacac
gccctgctggaggccgatgtggtcgcacaccaggaccgcattgacggcatcaccatccag
gcacgtcagttccaggaggcgggccactttgacgccgacaacatcaagcgcaagcaggag
gcgctggtggcgcgctatgacgcccttcgcgacccaatggctgcccgtaagcagaagcta
tcggactccctgcggctgcagcagctcttcagggatgtggaggacgaggagacctggatc
cgggagaaggagcccatcgccgcctccaccaaccggggaaaagacttgattggcgttcag
aacttgctgaagaagcaccaggccctgcaagcggagatcgccggccacgaaccccgcatc
aaggctgtcactcaaaagggagaggccatggtggaggaaggtcactttgccagggaggag
gtgaaggtgaagctggaggagctgaatggccgctgggacaccctgaagggcaaggccggc
cagcgcaggcaggacctggaggactctctgcaggcccagcagtactttgctgacgccaac
gaggcagagtcctggatgagggagaaggagcccatcgtgggcagccccgactacggcaag
gacgaggactctgctgaggccctgctaaagaagcacgaagccctgatgtctgacctgagt
gcctatggaagcagcattcaggctctgaaggagcaggcccaaacctgtaggcaacaagtg
gctcctaccgatgatgagacgggtaaagagctggtgctggccctctatgactaccaggag
aagagcccccgcgaggtcaccatgaagaagggagacatcctcaccctgctcaacagcact
aacaaggactggtggaaggtggaggtgaacgaccgccagggttttgtgccggcagcctac
gtcaagaagctggatcccacccagtcctcttccagagagaacctgctggatgagcaggga
agcatcggcctgcgccaggatcagatcgagaaccagccgttggccaaggaggcgtgcagt
gtgtctgtacgcatgaagcaggtggaggaactgtacggaactctccaggagctgggcgag
aagcgcaaggacatgctggagaagagctgcaagaagttcatgctgttccgcgaggccaac
gaactgcagcagtggatcaacgagaaggagggagccctcaccaacgaagaagtgggctcc
gacctggagcaggtggaggtgctgcagaagaagtttgacgacttccagaaggacctgaag
gccaatgagtctcgtctgagggacatcaacaaggtggcgtctgagctggagtctgagggc
ctgatggcagaggaggcaaccatggtccaagctcaggaacaagtgatgctgggatctgct
cctggacaggatgaggctgataacaagaatgcctcaccatggaagaatgtacgcttggct
gttcaaacgacggctaactttaatactatcaaggagctgaacaaccgctggagatccctg
cagcagctggcagaggagaggagcaacatgctgggtagtgcccacgaagtgcagaggttc
cacagggatgcggatgagaccaaggagtggatcgaggagaagaaccaggccctgaacaca
gacaactacggccatgacctggccagcgttcaggccctgcagcgcaaacacgagggcttt
gagagagacctggccgccctgggagataaggtgaactccctgggggagacagcggagcgt
ctgatccagtcccacccggaggcggtggacgacatccaggagaagtgcacagagctcaat
acggcctggagcagcctggtggggcgcgccgaccagcgcaaggacaagctaggcaactcc
catgacctgcagcgcttcctctccgacttcagggacctcatgtcctggatcaacggcatc
cgaggcctggtgtcctctgaggagctggccaaggacgtgaccggggctgaggccctgcta
gagagacaccaggagcaccgtactgagatcgacgcccgtgcgggcaccttccaggccttt
gagcagtttggtcagcagctgttggggcgcggccactatgccagccctgagatccagcag
aagctggaggccttggaccgcgagagagccgacctggagaaggcctgggtgcagagacgc
atgatgctggaccagtgcctggagctccagctgttcaaccgtgactgtgaacaggcagag
aactggatggcggctcgagaggccttcctggccagcgacgacaagggtgactccctggac
agcgtggaggctctcatcaagaaacacgaggactttgacaaggccatcaacgtgcaggag
gagaagatcgctgctctacagtcttttgctgaccagctggttggcgctgaccattatgcc
aaacctgagatattcaaccgtcgcaatgaagtcctggacaggtggcgccatctgaaggct
cagatgattgagaagcgctccaagctgggcgagtcccagactctgcagcagttcagccgc
gacgtggacgagatcgaggcttggatcagcgagaagctgcagacggccacagacgagtcc
tataaggaccccaccaacatccagagtaagcaccagaagcaccaggccttcgaggcggag
ctgcacgccaacgcagaccgtatccgtggggtcatcgacactggcaacgccctcatccat
agaggggcctgctccggcagtgaggacgcagttcagtcgcgtctgggtgccctggatgag
cagtggcagtttctggtgaacaagtcggcagagaagagccagaagctgaaagaagccaac
aagcagcagaacttcaacactggcatcaaggactttgacttctggctctctgaggtcgag
gcccttcttgcctctgaggattatggcaaagacctggcctccgtcaacaacctactgaag
aaacaccagcttctggaagccgacatctctgctcatgaggatcgtctgaaggacctgaac
ggccaggctgacagcctgacggccagcacggccttcgaccccacccaggtcaaggacaaa
cgcgacgccgtcaatggacgcttcgccaagatcaagagcatggccgccggccgccgcgca
aagctcaacgagtcacaccgcctgcaccagttcttcagggacctggacgacgaggagtct
tggatcaaagaaaagaaattgctagtgagttcggaggactatggacgtgatttgacagga
gtgcagaatctgaggaagaaacacaagaggctggaagctgagttgggggcccatgagccg
gccatccagtctgtgcaggacacagggaagaagctgtccgatgacaacaccatcggccag
gaagagatcgagcagaggctgggccagtttgaggagcattggacggagctgaaggacctg
gctgcagccaggggacagaggctggaggaatcgctggagtaccagcagtttgttgcaaat
gttgaagaggaggaagcctggattaatgagaagctgaacctagtgggaagcgaagactac
ggggataccctggccgccgtgcagggcctgttaaagaagcatgaggcgtttgagactgac
ttctccgtgcacagggacagagtgaatgacgtgtgttccaacggagacgagctcatcaag
aagaacaaccaccacgtggacagcatctcagccaagatggtgtccctgcggggcaaggtg
tctgagctggagcgggctgctgccatgaggaaagccaagctggatgagaactctgccttc
ctgcagttcaactggaaggctgacgtggtagagtcctggatcggtgagaaggagaacagc
ctgaagactgatgactacggacgagatctctcctctgtgcagacgttactcactaagcag
gagacgtttgacgcggggctgcaggccttccagcaggagggcatcaccaacatcacggcc
ctcaaggaccagctgctggcggccaagcacgtccagtccaaggccattgaggcgcgccat
gccgccctcatgaaacgctggaaccagcttctcgacaactcgcaggcccgcaagaagaaa
ctgctggaggcccaggagcacttcaggaaggtggaagacctgttcctgacctttgccaag
aaggcgtcggccttcaacagctggtttgagaacgctgaggaggacttgacagatccggtg
cgctgcaactcgctggaggagatccgggcgctgcgcgacgcccacgaggccttccgctca
tcgctgagctcggcgcaggccgacttcaaccagctggccgagctggaccggcagatcaag
agctaccaggtggtgtccaacccctacacctggttcaccatggaggccctggaggagacc
tggaggaacctgcagaagatcatcaaggaacgagagctggagctgcagaaggagcagagg
aggcaggaggagaacgacaagctgcggcaggagtttgcgcagcatgccaatgcattccac
cagtggctgcaggagaccaggacatatcttctggatgggtcctgcatggtagaagagtcc
ggaaccttggaatcacaacttgaggcaaccaagcgtaagcaccaggagatccgggccatg
cgcagccaactgaagaagatcgaggacctgggcgcggccatggaggaggctctgatcctg
gacaacaagtacacagaacacagcacggtgggcctggcccagcagtgggaccagctagac
caactgggcatgaggatgcagcacaacctggagcagcagatccaggccaggaacaccact
ggagtgacagaggatgccctgaaggagttcagcatgatgttcaagcactttgacaaagag
aagtctggccgtctgaaccaccaggagttcaagtcgtgtctgcgctcgctgggttacgac
ctgcccatggtggaggagggagagccagaccccgagtttgagtccatccttgacactgtc
gaccccaacagggatggcaacgtgtccttgcaggagtacatggccttcatgatcagccgc
gagacagagaacgtcaagtccagcgaggagattgagagcgccttccgagccctcagcgtc
gatgccaagccctacgttaccaaggaggagctttaccagaatctgtccaaggaacaggca
gactactgcatctcgcacatgaagccctacctagacagcaagggccgggaaatgccctcg
gccttcgactttgtcgaattcacccgctcgcttttcgtcaactga
DBGET
integrated database retrieval system
