Coregonus clupeaformis (lake whitefish): 121582095
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Entry
121582095 CDS
T08357
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121582095
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121582095
5.6.2.5 RNA 5'-3' helicase
121582095
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121582095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
ResIII
AAA_16
AAA_7
FapA
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
121582095
NCBI-ProteinID:
XP_041753580
LinkDB
All DBs
Position
15:4292037..4324560
Genome browser
AA seq
2485 aa
AA seq
DB search
MMSTCRWCTSVGDDVAKLLQRYCAGSLLAEDEEAVNEKKALNEDLGFCLECVVVYHRAKE
ELPGLHRRLWELETSRLLGHFSNAAKNAQPAKDLSYVEEDGREIGVPHINPAEYENYIRV
PLSEVLKYPYLLAQPELSEMCVEAICKMEEYNSFQVLDKYPGIYLLLVHPNETVRRWAIG
AARTLGKVDRDDFYELQDIFSCMFCNVELRIPQNFPDMDTSYDPTTKMTWLQPHLYDSKN
DKNYWLGICMLLTQLDAQAMDSLFLGPDKQANILHCILNAMDCGMEDEEPSKEMDPFWPV
LQCFMVILDCLGSKFWGPIEPTQAFQAITGRPSYSAELESIKQQTMISRVKTETTCDDDM
VTCSQMVYDSNTKVSKEKGSRRSHGADSSVVYEEMSSLVNLLHSEMGQALRVHDSTFLWF
IPFVKSVMDLDERSVIYINEVVHYLCGEISTDLLKRQVRICDKVTEFFTLILVHIIDLHL
GSGRMNMLYYCAPKWVGVLVKCATLPGDAFVHTSEGSVSHSVSSTSSLRVSAPRKASTSR
AVPQACTHIIRSLLKEGSRLNPNSKCKHFLNRLNKHLREGPQREWKLIRLEIQELQICLK
DYVKTMMNRPTTSTPPPEQLNIDAGPVAPTTPPLQSSNDTSGSSGLAEFNHPIKQEGLWD
YVDGSTSGGRDSNAVQRGRDIDLALLKKEPLTPEEEFVEPTNDSRPTQEKFSSLRADPEK
IQVIKSRLGQLMTKKSHSERDEPSVGLSEFGKEKPQNLFTSHRDEASNYQGISRDPPCPQ
ESVDNEQVDNVPLSVLKSNLKGRVGFKSSQDRSKGNSRQFDRQRSPPKPPSEVIVISDDE
AILNVGRARGTGSFSETSQIKNEPDTSDQNHSTWRDYDGNMSESQVFEFETQEYMASAWS
NRDSESNMPPEKPKEDSPVRHLLSPTLREPLSTWECDTQPIYDEDIERACKQVEKELEKP
KTPPQGLKRAIVVKKRNLLVDAKPLASKCLSKKPTVVEKLIKEPVKDAPHAVTPPLRKSS
STVRSNRLETETPSSLTTSAISHKTSLTPAIVPPKKVRKAAEPVSIAEKLGLKKKERKAF
NLSQQSHDTVDELRRHGATVDVPQAKKPTRKTKRSKVTSPHKRVVNGSNKKLLASQEFQF
FRQSKQASGAGTSAKAEPMKRNPKKIDEIQRPSFVTEADDEDEDLRCSQLDPARHEEQLT
FNRSSQRANENKPASSNTVSSVSSNMDRQISPYFQRNDDVTPGPSGQVSKSNEEGDGYDA
DWMYLTQMEPTDMEMCSQMEEEEEEEEFFYTQRDPVDMDIDSDSQMPFDEKGGSSDWTWP
KQADEGQEAPLATQTFKKPATPPPSRSNLAKDDDRLFLKPGMSPMSVKKAKPSTTKIYAT
SSSRSASLVQEMERTANASFSASSAPAGRGRPARPVVPGRPVVPARSPCVLQPPPHPEVG
QSLQLNRLLYRPITPQLPPKPIPPKQPLPRPEQILPRPPGQPLRPIQHSNIGSTPQPSTS
KTYPRPDAPFQRQIPNPEVCVRFDPNYLIQHILKWTFDMFSNYKQFGIPSEVCELPLETV
GFSFSSYDKYYKTFYPLLLTNTFEELAGEWLKNKESGKVVTQNLKVVANEYSNSVWNVSF
TASITASDVSRQMYPREDDLVILWLPQNTGAYSRHEQGFLDPQEHFGYVQRSNICNGGVG
QCPTLNLMIKTLGNVTMANKQAVRCDVVDSLVSTMRVFRAICQLNGSSMLKPILAPQVSY
FQPGPEVIPSLNLPGYNPDQVRAVRTGMSVIRNQQLTPKICLIHGPPGTGKSKTIVGLLQ
TLFSEGVQSMAPPVNRQAKPRRTRVLLCAPSNAAIDNLMKKIILVFKEKCKNIQGNCGDI
NLVRLGNDRTISKNLKPFSLDSQVKNKTQKALMSQDSDVHRRIAQLDENIDKISKMLPKL
QKNEEMYHELAEQKSRLLQERKTLGYQLKQSRSRKQETQARVLQDAHVVCCTLSSSGSTV
LESAFRRLGHKPFSCVIVDEAGQATETETLIPMLYQCNALILVGDPHQLPPTVISQTAKE
LKYGQSLMARLVTNLDHYCKENKMPSPVVFLSYQYRMHPDICEFPSKHIYRKALKTDDDT
AARMVNFGWPFQPYRVFDVTDGQEVKEGESFSNLKEVQLVVILLRMMAEKQQVKVGVITP
YKAQKDRINRELAKMVNKNLTVDVDTVEGFQGREMDCIIVSCVRASHEQGGIGFLGNRQR
LNVTITRAKFSLFILGHLRTLQENQDWGALIKDAATRDVIKSTNEMTFKTVSRKIFKQEL
TRSLSNPLREPGPPPAASRAAPIGLRRSSEPALFAQGWDSPKQPSSASPPQAADRPTDPR
LVVQHPQAPQHRADWDLRAEGIRDPRAEMRRDPRAEMRRDPRAEIRRDPRAEIRRDPRAE
IRRDPRAEIRRDPRAEIRRDPRAEGYRDSRVENLRDPRAERDPRVRNSPEQLHPTVYQNL
RCAGRERDMDRERHHSPVTAPCPGD
NT seq
7458 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcacgtgccgttggtgcacatcagtgggcgacgatgttgcaaaactgctccag
aggtactgtgctgggtctctgttagcagaggatgaggaggcagtcaacgaaaagaaggca
ctcaacgaggaccttgggttctgcctggagtgtgtggtagtgtaccaccgggcgaaagag
gagttgcctggactgcacaggaggctatgggagttggagacgtccaggctcctgggtcac
ttctctaatgcagcaaagaacgcacagccggctaaggacctcagctatgtagaagaggac
ggccgggaaatcggagtgcctcatatcaaccccgcagagtacgagaactatattcgtgtt
cccctgtcagaggtcctcaaatacccctacctgctggcacaacccgaattgagtgaaatg
tgtgttgaggcaatatgtaagatggaggaatataactccttccaggtgttggataaatat
ccagggatctacctcctcctcgtccaccccaacgagacggttaggcggtgggcaattggt
gctgccaggactttagggaaggtggaccgagacgacttttatgaacttcaggacatcttc
tcctgcatgttctgcaatgtcgagctgcgaatcccccagaacttcccagacatggatacc
tcctatgatcctacgactaagatgacatggctgcaaccgcatctttacgattccaaaaat
gacaaaaactactggttgggtatctgtatgcttctgacacagctggatgcccaggctatg
gactcgctgttcctggggccagacaaacaggccaacatactgcactgtatccttaatgcc
atggactgtggcatggaggatgaagaaccatccaaggagatggatcccttctggccagtc
ttgcagtgttttatggtgatcttggattgtttgggctctaaattttggggtccgattgag
ccaacccaagccttccaggccatcacaggaagacctagctactctgcagagctcgagagc
atcaaacaacaaaccatgatatcacgggttaaaacggaaactacatgtgatgatgacatg
gtgacctgcagtcagatggtttatgacagtaacaccaaagtgagcaaggaaaagggtagc
agacgctcacatggtgcagatagcagtgtggtctatgaggaaatgagttctctggtcaac
ctcctgcattcagaaatgggccaggcattgcgtgtgcacgacagcacatttctctggttc
atcccctttgtgaagtctgttatggacctcgatgaacgcagtgtcatatacattaatgag
gttgtccactacctgtgtggggagatcagcacggatctcctgaagcgccaggttcgcata
tgtgacaaggtcacggagttcttcacccttattctcgtccatatcatcgatttgcacctg
gggagtggccgcatgaatatgctttattactgcgctcccaagtgggtgggcgtgttggtg
aaatgtgcaaccctgcctggtgatgcttttgtccacacctcggaaggttcagtgtctcac
tctgtgtcttccacatcctcattgagggtcagtgcaccccgaaaggcctctactagcagg
gctgttccacaggcatgcacgcatatcatccggtccctgctgaaggaagggagcaggctg
aaccccaacagtaagtgcaagcacttcctgaaccgtttgaacaagcacctcagagaaggg
ccccagagggagtggaagctgattaggctggagattcaggagcttcagatctgtctgaag
gactatgtcaagacgatgatgaacaggccaaccacaagtactcctccacccgaacagctg
aacattgatgcagggcctgtggcaccaaccacaccaccacttcaatcaagcaatgacacc
tcgggatctagcggcttagctgaatttaaccatcctataaaacaggaagggttgtgggat
tatgtcgacggcagtacatctggtggtagggattctaatgcagttcagaggggcagggac
atagacctagcgttgctgaaaaaggagcccctaacccctgaggaggagtttgtagagccg
actaatgattcaagaccaacccaagagaagttctcttccttgagggcagatccagagaaa
atacaggtgatcaaatccagacttggccagcttatgaccaagaagtcccactctgagaga
gatgagccctctgtagggctcagtgaatttggtaaagagaaacctcaaaatctgttcacc
agccatagagatgaggcatccaactaccaaggcattagcagagaccctccatgcccccaa
gaatctgttgacaatgagcaggtggacaatgtgcccctctctgttttaaaaagtaatctt
aaaggaagagtaggcttcaaatcttcacaagatcggagtaaaggaaactctagacaattt
gaccgacaacgatcaccaccaaagcctccttcagaagtcattgttatatctgatgacgag
gcaatattaaatgttggtagagcaagaggaactgggtctttttctgaaacatcccaaatt
aaaaatgaaccggatacctccgaccagaatcacagtacctggcgtgattacgacggaaac
atgagtgaatctcaggtgtttgagtttgaaacacaggaatatatggcgtctgcctggtcc
aacagagattcagaaagtaacatgccacccgaaaagcccaaagaagatagccctgtcaga
catcttttgagtccaactttaagagagcctttatcaacctgggaatgtgatacacaacct
atctatgacgaggatattgaaagagcctgtaagcaggttgagaaggagcttgagaagcct
aagaccccaccacaagggctcaaacgggccatcgttgtcaaaaaaagaaatcttcttgtt
gatgcaaaaccattggcctccaagtgcctgagcaagaaacctaccgtagtagaaaaacta
atcaaagagcctgtgaaggatgctccccatgcagtcacaccgccattgagaaaaagcagt
tcaacagtacgttcaaacagactagaaaccgagacaccttcttccttaaccacatcagcc
atctcacacaaaacgtcattaactccagccattgtccctcctaaaaaagtcagaaaagct
gcagagcctgtgtccatagcagagaagcttggccttaagaagaaggagcgaaaggccttt
aatctctcccagcaatcgcatgacactgttgatgagctgaggcgccacggtgctacagtc
gatgtcccacaggccaagaagccaacccgaaagaccaagaggtcaaaggtgacctcccct
cacaagagagtggtcaatgggagtaacaagaagctgctagcctcacaggaattccagttc
ttcaggcagagcaagcaggcatcgggagcaggaacctctgcaaaggcagagccaatgaag
agaaatccgaaaaagattgacgagattcaacgacccagttttgttacagaggcggacgat
gaagacgaggacctgcggtgttcccagctagatcctgcccgtcatgaggaacagctgacg
ttcaatcgcagctctcaaagagccaatgagaacaaaccagcatcctccaatacagtgagt
agtgtgtcatccaacatggacaggcagatatctccttactttcagaggaatgatgatgtc
acacctggaccatctggtcaagtctccaaaagcaatgaggaaggtgacggttatgatgca
gactggatgtacctcacccaaatggagccaactgacatggagatgtgctcgcagatggag
gaggaggaggaagaagaagagttcttctacacgcagcgggaccctgtagacatggacatt
gactcagacagccagatgccctttgatgaaaaaggagggtcttcagactggacatggcct
aaacaggcagacgaagggcaagaggctccacttgccacacagacctttaagaaaccggct
actccgccaccctcgcgctctaacttggctaaggacgatgatcgcttgttcctgaaacca
ggaatgtcccctatgtcggttaaaaaggccaagccgtccaccaccaagatctatgcaacc
tcaagctccaggagtgcctccttggtgcaagagatggagaggactgccaatgcttcattt
tcggcttcttctgcccctgctggaagaggtaggcctgcccggccagttgtgccaggccgg
ccagtcgtgcctgcacgaagtccctgtgtactacaacctcctcctcatccagaggtcggt
cagtctctccaactgaatcgactcttatacagacccatcacaccacaactaccacctaaa
cccattccaccaaaacaaccactacccagacccgaacaaatcctcccccgtccacctggc
cagcccctccgcccaatccagcacagcaacataggttccaccccccagccctccacttct
aagacctaccccaggcctgacgcccctttccaaaggcagatacccaacccggaggtttgc
gtcagatttgaccccaactacctgattcaacacatcctgaaatggacatttgatatgttt
agcaactacaagcagtttggtataccctctgaagtatgtgagttacccctggaaacagta
ggctttagcttcagctcttatgataaatactacaaaaccttttaccccctgcttctcacc
aacacttttgaggagcttgcaggtgaatggctaaagaacaaggaatcaggaaaggtggtc
actcagaatttaaaagttgtcgcaaatgagtacagcaacagtgtttggaatgtcagtttt
acagcgagcattactgccagtgatgtctcccgtcagatgtaccctagggaggatgacctg
gtcattctgtggctgccccagaatacaggtgcttactcacggcatgagcagggcttcttg
gatccccaagaacattttggctatgtacagagatccaatatctgcaacggaggtgtgggc
cagtgcccaacgctgaacctgatgataaagaccctggggaatgtgacgatggcgaacaag
caagcagtgcgctgtgatgtggtggactccctggtcagcaccatgagggttttcagggca
atctgtcagctcaatggcagctctatgctcaagcccatcctggccccacaagtctcctac
ttccaacctggcccggaggtcatccccagcctcaacctgcctggttacaacccagaccag
gtgagggcggtgagaaccggtatgtctgttatcaggaaccagcaactcaccccaaaaatc
tgccttatacacggacccccaggaacgggaaagagcaaaactattgtgggcctgctgcaa
acgctgttctctgagggagtacagagtatggctcctccagtgaacaggcaagctaaacct
cgccgcacgcgggtcctcctgtgcgccccgtccaacgccgccatcgacaatctgatgaag
aagattatcctggtcttcaaagagaagtgcaagaacatccagggtaactgtggggacatc
aatctggtgaggctcgggaacgacaggaccatctccaagaatctgaaaccttttagcctg
gacagtcaggtgaaaaacaaaacacaaaaggccctgatgtcacaggactcagacgtccac
agacgcatagcgcagctggatgagaacatagacaagatctccaagatgttgcccaaactg
cagaagaatgaggaaatgtaccatgagctggcagagcagaagtccagactgctccaagag
agaaagacactcggctaccagctcaaacagtctcgcagtaggaagcaggagacccaggcc
cgggtactgcaggatgcccatgtggtctgctgcaccctgagctccagcggcagcaccgtc
ctggagtcggcctttcggcgcctgggacacaagccctttagctgcgtcatcgtggacgag
gcagggcaggccaccgagacggagactcttatcccaatgctctaccagtgcaatgccctc
atcctggtgggagacccccatcagctgccacctacggttatctcccagacagcgaaggag
ttgaagtatggccagtccctgatggctcggctggtgaccaacctggatcactactgtaag
gagaacaagatgcccagccctgtggtcttccttagctaccagtaccgcatgcaccccgac
atctgcgagttcccctccaagcacatctaccgcaaggcccttaaaactgacgatgacact
gcagcgaggatggtgaactttggctggcctttccagccctaccgtgtgtttgacgtgact
gacggccaggaggtcaaggagggagagtcgttcagcaacctgaaggaggtgcagctggta
gtgatcctgctgaggatgatggctgagaagcagcaagtcaaggtgggtgtcatcacgccc
tacaaagcccagaaggaccgcatcaaccgcgagctggcgaagatggtcaacaagaacctc
acggtggacgttgacactgtggaaggcttccagggccgagagatggactgcatcatcgtc
tcctgcgtcagggcaagccacgagcagggcggcatcgggttcctggggaatcgccagagg
ttgaatgtgaccatcacccgggcaaagtttagcctgttcattctgggccatctacggaca
ctccaggaaaaccaagactggggtgcgcttatcaaagacgccgctacacgtgacgtcatt
aaatcaacgaatgagatgaccttcaagacggtctccaggaagatcttcaagcaggagctg
accaggagcctgtctaaccccctcagagaaccaggccctccccctgctgcctccagggct
gctcccatcgggctgcggcgctcctctgagccagccctgttcgcccagggctgggactcc
cccaagcagcccagctcggcatcccctccccaggccgctgacaggcccacagacccgcgt
ctggtagtccagcacccacaggccccccagcatagagcagactgggatctgcgagctgaa
ggaatccgggacccacgagcggagatgagaagggacccacgagcggagatgagaagggac
ccacgagctgagatcagaagggacccacgagctgagatcagaagggacccacgagctgag
atcagaagggacccacgagcggagatcagaagggacccacgagcggagatcagaagggac
ccacgagcggagggttacagagactcccgggtggaaaacctcagagacccacgagctgag
agggacccacgagtacggaacagcccagagcagcttcaccccactgtgtaccaaaacctg
agatgtgctggcagggagagggacatggacagagagcgacaccattcacctgtcacagcg
ccctgcccaggagactga
DBGET
integrated database retrieval system
