Coregonus clupeaformis (lake whitefish): 121582097
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Entry
121582097 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121582097
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121582097
5.6.2.5 RNA 5'-3' helicase
121582097
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121582097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
AAA_16
AAA_7
TIP49
Rad17
nSTAND3
FapA
Motif
Other DBs
NCBI-GeneID:
121582097
NCBI-ProteinID:
XP_041753585
LinkDB
All DBs
Position
15:4236047..4267309
Genome browser
AA seq
2593 aa
AA seq
DB search
MAEKEIRKKLEHIKKLSVEGSSEARKVGVKCKNRDMCSSSSEMELVKSSEEEEEEEEVMS
TCRWCTSVGDDVAKLLQRYCAGNLLAEDEKALNKDLRYCLECVVVYHRAKEELPGLHRVR
RNHRLWELETSRLLGNFSNAAKKARPSKDLSYVEEDGREIAVPHISPAEYEDSLRVPLSE
VLKYPYLLAQPELSEMCVEAICKMEEYNSFQVLDKYPGIYLLLVHPNETIRRWAIGAARS
LGKVDRDDFYELQDIFSCMFCNVELRIPQNFPDMDTSYDPTTKMTWLQPHLYDSKNDKNY
WLGICMLLTQLDAQAMDSLFLGPDKQANILHCILNAMDRGMEDEEPSKEMDPFWPVLQCF
MVILDCLGSRIWGPIEPTQAFQAITGRPSYSAELESIKQQTMISRVKTETTCDDDMVTCS
QMVYDSNTKVSKKDSKLVSCATSQERPRVRDSVEEKGSRRSHGADSSVVYEEMSSLVNLL
HSEMGQALRVHDSTFLWFIPFVKSVMDLDERSVIYINEVVHYLCGEISTDLLKRQVRICD
KVTEFFTLILVHIIDLHLGSGRMNMLYYCAPKWVGVLVKCATLPGDAFVHTSEGSVSHSV
SSTSSLRVSAPRKASTSRAVPQSCTHIIRSLLKEGSRLNPNSKCKHFLNRLNKHLREGPQ
REWKLIRLEIQGLQICLKDYVKTMMNRPTTSTPPPEQLNIDAGPVAPTTPPLQSSNDTSG
SSGLAEFNHPIKREGLWDYVDGSTSGGRDSNAVQRGRDIDLALLKKEPLTPEEEEEYVEP
TNDSRPTQEKFSSLRAHPEKIQVIKSRLGQLMTKKSNSERDEPSVGLSEFGKEKPQNLFT
SCRDEASNYQGISRDPPCPQESVDNEQVDNVPLSVLKSNLKGRVGSKSSQDRSKGYTRQF
DRQRSPPKPPSDVIVISDDEATLDVGRARGTQSFSETSQIKNEPDTSEQNHSTWRDYDGN
MSESQVFEFETQEYMASAWSNRDSESNMPPEKSKEESPVRHLLSPTLREPLSTWECDTQP
IYDEDIERACKQVEKELEKPKTPPQGLKRAIVVKKRKILVDPKPLASKCLSKKPTVVEKL
IKEPVKDAPHAVTPPLRKSSSTVRSNRLETETPSSLTTSAISHKTSLTPAIVPPKKVRKA
AEPVSIAEKLGLKKKERKAFNLSQQSHDTVDELRRHGATVNVLQAKQPTRHTKRSKVTSP
QKGVVNASNKKLLAAPFFRQSKQASGAGTSAKAEPMKRNPKKIDENQRPSFVTEEDDEDE
DLQCSQLDPARHEEQLTFNRSSQRANENKPASSNTVRSVSSNMDRQISPYFQRNDVIPGP
SGQVPKSNEEGDGYDADCMYLTQMEPTDMEMCSQMEEEEEFFYTQRDPVDMDIDSDSQMP
FEEKGGSSDWTLPNQADEGQEAPLVPQTFKKPATPPPSRSSLPQDDDRLFLKPGMSPMSV
KKAKPSTTKIYATSSSRSASLVQEMERTANAHFLASSAPAGRGRPARPVVPGRPVVPARS
PCVLKPPPHPDVGQSLQLNRLLYRPITPQLPPKPIPPKQPPPRSEQNLPRPPGQPLRPIQ
HSNIGSTPQPSTSKTYPRPDAPFQRQIPNPEVVIRFDPNYLIQHILKWTFDMFSNYKQFG
LPSEVCELPLETVGFSFSSYDEYYKTFYPLLLTNTFEELAGEWLKNKESGKVVTQNLKVV
ANEYSHSVWNVSFTASITASDVSRQMYPREDDLVILWLPQNTGAYSRHEQGFLDPQEYLG
YVQRSNICNGGVGQCPTLNLMIKTLGNVMLANKQAVRCDVVGSLVSTMRVFRAIWQLNGS
SMLKPILAPQVSYFQPGPEVIPSLNLPGYNPDQVRAVRTGMSVIRNQQLTPKICLIHGPP
GTGKSKTIVGLLQKLFSEGVQSMAPPVNRQAKPRRTRSPPVRPSNAAIDNLMKKIILVFK
EKCKNIQGNCGDINLVRLGNDRTISKNLKPFSLDSQVKNKTQKALMSQDSDVHRRIAQLD
ENIDKISKMLPKLQKNEEMYHELAEQKSRLLQERKTLGYQLKQSRSRKQETQARVLQDAH
VVCCTLSSSGSTVLESAFRRLGHKPFSCVIVDEAGQATETETLIPMLYQCNALILVGDPH
QLPPTVISQTAKELKYGQSLMARLVTNLDHYCKENKMPSPVVFLSYQYRMHPDICEFPSK
HIYRKALKTDNDTAARMVNFGWPFQPYRVFDVTDGQEVKEGESFSNLKEVQLVVILLRMM
AEKQQVKVGVITPYKAQKDRINRELAKMVNKNLTVDVDTVEGFXGREMDCIIVSCVRASH
EQGGIGFLGNRQRLNVTITRAKFSLFILGHLRTLQENQDWGALIKDAATRDVIISTNEMT
FKTDSRKIFKQELTRSLSNPLREPGPPPAASRAAPIGLRRSSEPALFAQGWDSPKQPSSA
SPPQAADRPTDPRLVVQHPQAPQHRADWDLRAEGIRDPRAEIRRDPRAEIRRDPRAEIRR
DPRAEIRRDPRAEIRRDPRAEIRRDPRAEGYRDSRVENLRDPRAERDPRGRNSPEQLHPT
VYQNLRCAGRERDMDRERHHSPVTAPCPGDGVNRPPWDHSATASFNNHTHTHPQKRAPDT
RWIPPTHSKRGKR
NT seq
7782 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaaaggaaatcaggaagaaactggagcatattaagaagttgagtgtagaggga
agtagtgaggcgaggaaggtcggagtcaagtgcaaaaacagggatatgtgctccagtagt
tcagagatggaacttgttaagagttcagaagaagaagaagaagaagaagaagtgatgagc
acatgccgttggtgcacgtcagtgggcgacgatgttgcaaaactgctccagaggtactgt
gctgggaatctgttagcagaggatgagaaggcactcaacaaggacctcaggtactgcctg
gagtgtgtggtagtgtaccacagggcgaaagaggagttgcctggactgcacagggtaagg
aggaaccataggctatgggagttggagacgtccaggctcctgggcaacttctctaatgca
gcaaagaaggcacggccgtctaaggacctcagctatgtagaagaggacggccgggaaatc
gcagtgcctcatatcagccccgccgagtacgaggacagtcttcgggttcccctgtcagag
gtcctcaaatacccctacctgctggcacaacccgaattgagtgaaatgtgtgttgaggca
atatgtaagatggaggaatataactccttccaggtgttggataaatatccagggatctac
ctcctcctcgtccaccccaacgagacgattaggcggtgggcaattggtgctgccaggtct
ttagggaaggtggaccgagacgacttttatgaacttcaggacatcttctcctgcatgttc
tgcaatgtcgagctgcgaatcccccagaacttcccagacatggatacctcctatgatcct
acgactaagatgacatggctgcaaccgcatctttacgattcaaaaaatgacaaaaactac
tggttgggcatctgtatgcttttgacacagctggatgcccaggctatggactcgctgttc
ctggggccagacaaacaggccaacatactgcactgtatccttaacgccatggaccgtggc
atggaggatgaagaaccatccaaggagatggatcccttttggccagtcttgcagtgtttt
atggtgatcttggattgtttgggctctaggatttggggtccgattgagccaacccaagcc
ttccaggccatcacaggaagaccaagctactctgcagagctcgagagcatcaaacaacaa
accatgatatcaagggttaaaacggaaactacatgtgatgatgacatggtgacctgcagt
cagatggtttatgacagtaacaccaaagtgagcaagaaggattccaagcttgtttcatgt
gctaccagtcaagagcgtccacgagtcagggacagtgttgaggaaaagggtagcagacgc
tcacatggtgcagatagcagtgtggtctatgaggaaatgagttctctggtcaacctcctg
cattcagaaatgggccaggcattgcgtgtgcacgacagcacatttctctggttcatcccc
tttgtgaagtctgttatggacctcgatgaacgcagtgtcatatacattaatgaggttgtc
cactacctgtgtggggagatcagcacagacctcctgaagcgccaggttcgcatatgtgac
aaggtcacggagttcttcacccttattctcgtccatatcatcgatttgcacctggggagt
ggccgcatgaatatgctctattactgcgctcccaagtgggtgggcgtgttggtgaaatgt
gcaaccctgcctggtgatgcttttgtccacacctcggaaggttcagtgtctcactctgtg
tcttccacatcctctttgagggtcagtgcaccccgaaaggcctctactagcagggctgtt
ccacagtcatgcacgcatatcatccggtccctgctgaaggaagggagcaggctgaacccc
aacagtaagtgcaagcacttcctgaaccgactgaacaagcacctcagagaagggccccag
agggagtggaagctgattaggctggagattcaggggcttcagatctgtctgaaggactat
gtcaagacgatgatgaacaggccaaccacaagtactcctccacccgaacagctgaacatt
gatgcagggcctgtggcaccaaccacaccaccacttcagtcaagcaatgacacctcggga
tctagcggcttagctgaatttaaccatcctataaaacgggaagggttgtgggattatgtc
gacggcagtacatctggtggtagggattctaatgcagttcagagggggagggacatagac
ctagcgttgctgaaaaaggagcccctaacccctgaagaggaggaggagtatgtagagccg
actaatgattcaagaccaacccaagagaagttctcttccttgagggcacatccagagaaa
atacaggtgatcaaatccagacttggccagcttatgaccaagaagtccaactctgagaga
gatgagccctctgtagggctcagtgaattcggtaaagagaaacctcaaaatctgttcacc
agctgtagagatgaggcatccaactaccaaggcattagcagagaccctccatgcccccaa
gaatctgttgacaatgagcaggtggacaatgtgcccctctctgttttaaaaagtaatctt
aaaggaagagtaggctccaaatcttcacaagatcggagtaaaggatacactagacaattt
gaccgacaacgatcaccaccaaagcctccttcagacgtcattgttatatctgatgacgag
gctacattagatgttggtagagcaagaggaactcagtctttttctgaaacgtcacaaatt
aaaaatgaaccggatacctccgaacagaatcacagtacctggcgtgattacgacggaaac
atgagtgaatctcaggtgtttgagtttgaaacacaggaatatatggcgtctgcctggtcc
aacagagattcagaaagtaacatgccacccgaaaagtccaaagaagagagccctgtcaga
catcttttgagtccaactttaagagagcctttatcaacctgggaatgtgatacacaacct
atctatgacgaggatattgaaagagcctgtaagcaggttgagaaggagcttgagaagcct
aagaccccaccacaagggctcaaaagggccatcgttgtcaaaaaaagaaagattcttgtt
gatccaaaaccattggcctccaagtgcctgagcaagaaacctaccgtggtagaaaaacta
atcaaagagcctgtgaaggatgctccccatgcagtcacaccgccattgagaaaaagcagt
tcaacagtacgttcaaacagactagaaaccgagacaccttcttccttaaccacatcagcc
atctcacacaaaacgtcattaactccagccattgtccctcctaaaaaagtcagaaaagcc
gcagagcctgtgtccatagcagagaagcttggccttaagaagaaggagcgaaaggccttt
aatctctcccagcaatcgcatgacactgttgatgagctgaggcgccacggcgctacagtc
aatgtcctacaggccaagcagcctacccgacacaccaagaggtcaaaggtgacctcccct
cagaagggagtggtcaatgcgagtaacaagaagctgctagccgcaccgttcttcaggcag
agcaagcaggcttcgggagcaggaacctctgcaaaggcagagccaatgaagagaaatcct
aaaaagattgacgagaatcaaagacccagttttgttacagaggaggacgatgaagacgag
gacctgcagtgttcccagctagatcctgcccgccatgaggaacagctgacgttcaatcgc
agctctcaaagagccaatgagaacaaaccagcatcatccaatacagtgaggagtgtgtcg
tccaacatggacaggcagatatctccatactttcagaggaatgatgtcatacctggacct
tctggtcaagttcccaaaagcaatgaggaaggtgacggttatgatgcagactgtatgtac
ctcacccaaatggagccaactgacatggagatgtgctcgcagatggaggaagaagaagaa
ttcttctacacgcagcgggaccctgtagacatggacattgactcggacagccagatgccc
tttgaggaaaaaggagggtcttcagactggacactgcctaatcaggcagacgaagggcaa
gaggctccacttgtcccacagacctttaagaaaccggctactccgccaccctcgcgctct
agcttgcctcaggacgatgatcgcttgttcctgaaaccaggaatgtcccctatgtcggtt
aaaaaggccaagccgtccaccaccaagatctatgcaacctcaagctccaggagtgcctcc
ttggtgcaagaaatggagaggactgccaatgctcattttttggcttcttctgcccctgct
ggaagaggtaggcctgcccggccagttgtgccaggccggccagtcgtgcctgcacgaagt
ccctgtgtactaaaaccacctcctcatccagatgtcggtcagtctctccaactgaatcga
ctcttatacagacccatcacaccacaactaccacctaaacccattccaccaaaacaacca
ccacccagatccgaacaaaacctcccccgtccacctggccagcccctccgccctatccag
cacagcaacataggttccaccccccagccctccacttccaagacctaccccaggcctgac
gcccctttccaaaggcagatacccaacccggaggttgtcatcagatttgaccccaactac
ctgattcaacacatcctgaaatggacatttgatatgttcagcaactacaagcagtttggt
ttaccctctgaggtatgtgagttaccgctggaaacagtaggcttcagcttcagctcttat
gatgaatactacaagactttttaccccctgcttctcaccaacacttttgaggagcttgca
ggtgaatggctaaagaacaaggaatcaggaaaggttgtcactcagaatttaaaagttgtc
gcaaatgagtacagccacagtgtttggaatgtcagttttacagcgagcattactgccagt
gatgtctcccgtcagatgtaccctagggaggatgacctggtcattctgtggctgccccag
aatacaggtgcttactcacggcatgagcagggcttcttggatccccaagaatatttaggc
tatgtacagagatccaatatctgcaacggaggtgtgggccagtgcccaactctgaacctg
atgataaagaccctggggaatgtgatgttggcgaacaagcaggcagtgcgctgtgatgtg
gtgggctccctggtcagcaccatgagggttttcagggcaatctggcagctcaatggcagc
tctatgctcaagcccatcctggccccacaggtctcctacttccaacctggcccggaggtc
atccccagcctcaacctgcctggttacaacccagaccaggtgagggcggtgagaaccggt
atgtctgttatcaggaaccagcaactcaccccaaaaatctgcctgatacacggaccccca
ggaacgggaaagagcaaaaccattgtgggcctgctgcaaaagctgttctctgagggagta
cagagtatggctcctccagtgaacaggcaagctaaacctcgccgcacgcggagtcctcct
gtgcgcccgtccaacgccgccatcgacaacctgatgaagaagattatcctggtcttcaaa
gagaagtgcaagaacatccagggtaactgtggggacatcaatctggtgaggctcgggaac
gacaggaccatctccaagaatctgaaaccttttagcctggacagtcaggtgaaaaacaaa
acacaaaaggccctgatgtcacaggactcagacgtccacagacgcatagcgcagctggat
gagaacatagacaagatctccaagatgttgcccaaactgcagaagaatgaggaaatgtac
catgagctggcagagcagaagtccagactgctccaagagagaaagacactcggctaccag
ctcaaacagtctcgcagtaggaagcaggagacccaggcccgggtactgcaggatgcccat
gtggtctgctgcaccctgagctccagcggcagcaccgtcctggagtcggcctttcggcgc
ctgggacacaagccctttagctgcgtcatcgtggacgaggcagggcaggccaccgagacg
gagactcttatcccaatgctctaccagtgcaatgccctcatcctggtgggagacccccat
cagctgccacctacggttatctcccagacagcgaaggagttgaagtatggccagtccctg
atggctcggctggtgaccaacctggatcactactgtaaggagaacaagatgcccagccct
gtggtcttccttagctaccagtaccgcatgcaccccgacatctgcgagttcccctccaag
cacatctaccgcaaggcccttaaaactgacaatgacactgcagcgaggatggtgaacttt
ggctggcctttccagccctaccgtgtgtttgacgtgactgacggccaggaggtcaaggag
ggagagtcgttcagcaacctgaaggaggtgcagctggtagtgatcctgctgaggatgatg
gctgagaagcagcaggtcaaggtgggggtcatcacgccctacaaagcccagaaggaccgc
atcaaccgcgagctggccaagatggtcaacaagaacctcacggtggacgttgacactgtg
gaaggcttcncagggcgcgagatggactgcatcatcgtctcctgcgtcagggcaagccac
gagcagggcggcatcgggttcctggggaatcgccagaggttgaatgtgaccatcacccgg
gccaagtttagcctgttcattctgggccatctacggacactccaggaaaaccaagactgg
ggtgcgcttatcaaagacgccgctacacgtgacgtcattatatcaacgaatgagatgacc
ttcaagacagactccaggaagatcttcaagcaggagctgaccaggagcctgtctaacccc
ctcagagaaccaggccctccccctgctgcctccagggctgctcccatcgggctgcggcgc
tcctctgagccagccctgttcgcccagggctgggactcccccaagcagcccagctcggca
tcccctccccaggccgctgacaggcccacagacccgcgtctggtagtccagcacccacag
gccccccagcatagagcagactgggatctgcgagctgaaggaatcagggacccacgagcg
gagatcagaagggacccacgagcggagatcagaagggacccacgagcggagatcagaagg
gacccacgagcggagatcagaagggacccacgagcggagatcagaagggacccacgagcg
gagatcagaagggacccacgagcggagggttacagagactcccgggtggaaaacctcaga
gacccacgagctgagagggacccacgaggacggaacagcccagaacagcttcaccccact
gtgtaccaaaacctgagatgtgctggcagggagagggacatggacagagagcgacaccat
tcacctgtcaccgcgccctgcccaggagacggagtcaacagaccaccgtgggaccacagt
gctacagcctccttcaacaaccacacacacactcacccccagaaacgagccccagacacc
cgatggatccctcccacccactccaagagggggaagagatga
DBGET
integrated database retrieval system
