Coregonus clupeaformis (lake whitefish): 121582140
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Entry
121582140 CDS
T08357
Name
(RefSeq) transitional endoplasmic reticulum ATPase isoform X1
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04137
Mitophagy - animal
cclu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121582140
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121582140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121582140
03009 Ribosome biogenesis [BR:
cclu03009
]
121582140
04131 Membrane trafficking [BR:
cclu04131
]
121582140
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121582140
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
121582140
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
121582140
Membrane trafficking [BR:
cclu04131
]
SNARE
SNARE associated proteins
Others
121582140
Autophagy
Aggrephagy
Other aggrephagy associated proteins
121582140
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121582140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_5
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
nSTAND3
AAA_28
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
ATPase
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
121582140
NCBI-ProteinID:
XP_041753679
LinkDB
All DBs
Position
15:complement(2715269..2743472)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKTRPNRLVVDESLNEDNSVVSLSQAKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPNPYCIVAPDT
VIHCEGEPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLSDDVDLEQVANQTHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNISWEDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNAGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRINILGAN
LRKSPIAKDVDLDFLAKMTNGFSGADLTEICQRACKMAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPTNSAPG
AGPSQGSAGGSGGTVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaggaggagaatcgaaaaatgatgatctatccacagcgattttaaagcagaag
accagacctaaccggttggttgtggatgaatctctcaatgaggacaacagtgtggtctct
ctgtctcaggccaagatggacgagttgcagttgttcaggggagacacagtgctgatgaaa
ggaaagaagagacgggagacagtctgcattgtgctctctgacgacacctgctccgacgag
aaggtccgcatgaacagagtggtccgcaacaacctgagagtccgcctgggtgatgtcatc
agtattcagccatgcccagatgtgaagtacgggaagcggatccacgttctgcccatcgat
gacactgtggaggggatcacagggaacctgtttgaggtctacctcaagccctacttcctg
gaggcctacaggcccatcaggaaaggggacatcttcctggtgaggggaggcatgcgagct
gtggagttcaaggtagtggagacggaccccaacccctattgcatcgtggccccagacaca
gtcatccactgtgagggggagcccatcaaacgagaggatgaagaggagtctctgaatgag
gttggctatgatgacattggtggtgtgaggaagcagctggcccagattaaggagatggtg
gagctgcccctgagacacccagcactgttcaaggccatcggcgtcaagcctccaaggggg
atcctgctgtacggaccccctggaacaggaaagactctgatcgcccgtgctgtggcaaat
gagactggagccttcttcttccttatcaatgggcctgagatcatgagtaaactggccgga
gagtctgagagtaacctgaggaaggccttcgaggaggcggagaagaatgcccccgccatc
atcttcattgacgaactggatgccattgcaccaaaaagagaaaagacacacggtgaggtg
gagaggcgcatcgtgtcccagctcctcacactcatggacggccttaagcagcgcgctcac
gtcatcgtcatggcagccaccaacagacccaacagcattgacgccgccctcaggcgattt
gggcgttttgacagggaggtggacattggcattcctgacgcaaccggcagactggagatc
ctccagatccacaccaagaacatgaaactgtccgacgatgtcgacctcgagcaggttgcc
aatcagactcacggccacgtgggtgctgacctggctgctctctgctctgaagccgccctg
caggccatcaggaagaagatggatctcatcgacctggaggacgagaccatcgacgcagag
gtcatgaactcccttgccgtcaccatggacgacttcagatgggctctgagccagagcaac
ccgtctgccctgagagagactgtggtggaggtgcccaacatcagctgggaggacatcggt
ggtctggaggacgtcaagagggaactccaggagcttgtacagtacccagtggagcaccca
gacaagttcttgaagttcggcatgaccccatccaagggcgtgctgttctacgggccccca
ggttgcggtaagaccctgctggccaaggccattgccaacgagtgccaggccaacttcatc
tccatcaaagggcctgagttgctcaccatgtggttcggagagtccgaggccaatgtccga
gagatcttcgacaaggctcgccaggccgccccctgcgtgctcttctttgacgagctggac
tccatcgccaaggcgcgtggcggcaacgcgggtgatggtggcggagcagccgaccgcgtc
atcaaccagatcttgacggagatggatggcatgtccagcaagaagaacgtcttcatcatc
ggcgccaccaacaggcctgatatcatcgacccggcaatcctgaggcccggcagactggac
cagctcatctatatccccctgccagatgagaagtcccgcataaacatcctcggagccaac
ctcaggaagtcacccatcgccaaggatgtggacctggatttcttggccaagatgaccaat
ggtttctctggagctgacctgacagagatctgccagagggcctgtaagatggccatcagg
gagtccatcgagaacgagatcaggagggagcgggagagacagaccaacccctcagcaatg
gaggtggaggaggacgaccctgtcccagagatccgtaaggaccactttgaggaggccatg
cgtttcgcccgccgctccgtcagcgacaacgacatccgcaaatacgagatgttcgcccag
acgttacagcagagcagaggcttcggtagtttccggttccccactaactctgcaccaggt
gccgggcccagccagggctctgctggtggcagcggtggcacagtcttcaacgaggacaac
gacgacgacctctatggttaa
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