Coregonus clupeaformis (lake whitefish): 121582170
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Entry
121582170 CDS
T08357
Name
(RefSeq) PDZ and LIM domain protein 5-like
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121582170
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121582170
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121582170
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
PDZ_2
LIM_FHL2-3_N
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-GeneID:
121582170
NCBI-ProteinID:
XP_045081122
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Position
15:45432586..45522149
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AA seq
632 aa
AA seq
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MSSNYSVSLVGPAPWGFRLQGGKDFCLPLTISRLTDGGKAAKAKISVGDVVLSIDGIATN
SMNHLEAQNKIKACTENLNLTLQRASSVPKADAPKDEPLEIIKPVPITYPAPPSTFTSPS
PQPSAAYNKTARPFGGGSNVGAVTSSLTAPKVASIPSASSAFTPAAPSSQQPQPPFPLGS
HSRSPAPPIAAPTIAAPPSSAPPPRPSSGRSPFTTPSSSSSSSPARVTAPSSNPGAPQSS
CYNTPINLYSNTNACEVAMGQRRGLLEAQGVVVDQIKEQFNGNRVEPELNHASPLSEASK
KRMIEDTEDWHPRTGTSQSRSFRILAQITGTENAQAQENSTGKNEVVEDAMPSAHVTTSV
KTMTKVSGAPRNGNGVPPPTFKTPSAQVKPSWPAGGPAGFPKGGAAPSFGRVSNTAPVPA
VPKGPDRPAPQAHPKDQDSLVQRAEHIAAGTRTPMCGHCDKVIRGPFLVAMGMSWHPEEF
NCSHCHTSLVESGFVEERGTVYCAHCYEEFFAPTCTSCKQKVLGEVINALKQTWHVYCFL
CASCQQPIRNNTFHMEDGLPYCERDYYQLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCF
VCAVCSTSLEGQAFFSKKDKALCKKHAHTVNI
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagtgtctccctggttggccccgccccctggggcttcagactgcag
ggaggaaaggacttctgtctgcccctcactatctcacggctgaccgatgggggcaaggca
gccaaagccaaaatcagtgtgggagatgtagttctgtctatcgacggcatcgccaccaac
agcatgaaccacctggaggcccagaacaagatcaaagcctgcacagaaaacctcaacctc
accctgcagagagcttccagtgttcccaaggctgatgcaccaaaggacgaaccgctggag
atcattaagcccgtgccaatcacctacccagccccaccatccacattcaccagcccctcc
ccccaacccagtgctgcctacaataagacagcccgcccctttggcgggggtagcaatgtg
ggtgcggtcacttcctccctgaccgccccaaaggtggcctccatcccttctgcatcgtct
gctttcacccccgccgccccctcctcccagcagccccagcctcccttcccactaggcagc
cactcccgctctccagccccacccatcgcagccccaaccatcgcagccccacctagctca
gccccaccccccagacccagctctggccgctcccccttcaccaccccctcctcgtcctcc
tcctcatccccggccagagtgacagcaccctcctccaatcccggtgctccgcagtcctct
tgctataacacgcccatcaacctatactccaacaccaacgcctgtgaggtggccatggga
cagaggcggggcctgttggaagcccagggtgtggtggtcgaccagatcaaagagcagttc
aatgggaacagagttgaaccagagttgaaccatgcctcgccactcagtgaggccagtaag
aagcgtatgatcgaggacacagaggactggcatcctcgcactggcacctcccagtccagg
tccttcagaatcctggctcagatcactggcacagagaacgcccaagcccaggagaacagc
actggaaagaatgaagttgttgaggatgccatgcccagtgctcacgtcacaacatcagtg
aagaccatgaccaaagtctcaggtgcccccaggaatggtaacggtgtccccccacccacc
ttcaagaccccctctgcccaggtcaaaccctcctggccggctggaggtccagcaggtttc
cctaagggtggagcggcgccctcttttggccgggttagcaacactgcaccagtacctgca
gtacccaaaggtcctgaccgccctgccccccaggcgcaccccaaggaccaggactccctg
gtgcaacgggccgagcacatcgcagcaggaacacgcacacccatgtgtggccactgtgac
aaggtcatcagaggtccgttcctggtggccatgggcatgtcgtggcaccctgaggagttt
aactgttcccactgccacacgtctctggtggagtcaggctttgtggaggagaggggaaca
gtgtactgtgctcactgctatgaagagttctttgcccctacctgcaccagctgcaagcag
aaggtcctgggggaagtcatcaatgccctgaagcagacctggcatgtgtactgcttcctg
tgtgcatcctgccagcagccaatcagaaacaacaccttccacatggaggacgggctgcca
tactgcgaaagagattactaccaactcttcggtaccagttgccatggttgcgacttcccc
atcgaggcaggagacaagtttctggaggcgttgggattcacctggcatgatacctgcttc
gtatgtgcagtctgcagcaccagtttggagggccaagccttcttctctaaaaaggacaag
gctctgtgcaagaaacacgcccacacagtcaatatctga
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