Coregonus clupeaformis (lake whitefish): 121582342
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Entry
121582342 CDS
T08357
Name
(RefSeq) serine/arginine-rich splicing factor 9
KO
K21123
serine/arginine-rich splicing factor 9
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121582342
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121582342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121582342
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
SR proteins
121582342
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_7
DUF2457
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
121582342
NCBI-ProteinID:
XP_041753997
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All DBs
Position
15:44978096..44981536
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AA seq
253 aa
AA seq
DB search
MTDGRIYVGNLPMDVQERDIEDLFFKYGKIRDVELKNNRGTIPFAFVRFEDPRDAEDAVY
GRNGYGFGDSKLRVEYPRSSGAKFSGPMGGGERGGEGGGPRGRFGPPTRRSEFRVIVTGL
PPTGSWQDLKDHMREAGDVCFADVQRDGEGVVEFVRREDMEYALRRLDRTEFRSHQGEMA
NIRVHGERGASYGRSRSRSRSPRGRGYSPPPYKSRGSPPQRYQSPPRRPVSRHSPPARRH
PVTNHSPPPRHYR
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggaaggatctacgtgggaaatcttccaatggatgtccaggagagggacata
gaggatctcttcttcaaatatggaaaaattcgggatgtcgaactaaagaataacagggga
accatcccttttgcttttgttcgcttcgaagatccacgggatgcagaagatgctgtctat
ggaaggaatggatatggattcggagactccaagctgcgtgtagaataccctcgctcctct
ggcgccaaatttagtggccctatgggaggcggagaaagaggaggagaaggagggggtcct
agggggaggtttgggcccccaactcggcgatctgagttccgggtgatagtgactggcttg
cccccaacaggcagctggcaggatctgaaagaccacatgcgtgaggcaggggatgtgtgt
ttcgctgacgtgcagcgggatggtgaaggggtggtggagtttgtccgtcgggaggacatg
gaatatgccctgcgcagactggacaggactgagttccgttcccatcagggagagatggcg
aatattcgtgtccacggagaacggggtgccagttatggtcgctcgcggtcccgctccaga
tccccccgggggcgtggctactcaccacctccttacaaaagcagagggtcccctccacag
cgctaccagtcacctccacggcgccctgtgtcccgccatagccccccagcgaggcgacat
ccagtaacgaaccacagcccgcccccacggcactatcggtag
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