Coregonus clupeaformis (lake whitefish): 121582449
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Entry
121582449 CDS
T08357
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04148
Efferocytosis
cclu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121582449
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121582449
03320 PPAR signaling pathway
121582449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121582449
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121582449
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
121582449
Nuclear receptors [BR:
cclu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
121582449
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Gene cluster
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Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
121582449
NCBI-ProteinID:
XP_041754171
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Position
15:40077960..40229206
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AA seq
535 aa
AA seq
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METKPFLSLGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHQRRISTGNTQRHLHIPSPS
APSWQTQHLGRHLYEINSSGQVTSSPLGSPTSHRGMHPSLLSPSSMGPSGSLHSPISTLS
SPMNGLGSPFSVISSPMGPHSMSSPCMGYGPSVSPQMFQLNSQMNSVSSSEDIKPPLGLN
GVMKVPAQPSQGCTPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCR
DNKDCLIDKRQRNRCQYCRYQKCLACGMKREVLLHSAVQEERQRAKERSENEVESTSSVN
EDMPVEKVLEAELAVEPKTETYIETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIP
HFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFD
RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQK
YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcttgtcattggggttcctgaagccccagtgctcgctggctccg
cccccccagcgaggacgctcgggggaggcctgctcctgtttcaccggcatgtgtcacctc
caccagcgccggatatctacaggtaacactcaacgccatctccacatcccctcgccatct
gccccgtcatggcagactcagcacctgggaagacacctttatgaaataaattcatcaggt
caggtgacctcgtctcccctgggctctcccacatcccaccggggcatgcacccatccctg
ctcagcccgtcctcaatgggaccctcgggctccctgcactctcccatcagcaccctgagt
tctcccatgaacggtctgggctcgccattctctgtcatcagctcccccatgggcccacac
tccatgtcctcaccttgcatgggctacggccccagtgtcagcccccagatgttccagctg
aactcccagatgaactcggtcagcagctcggaggacatcaagcccccgctgggtctcaac
ggggtgatgaaggtgcccgcccagccctcacaagggtgcacgcccctctccctcaccaaa
catatctgtgccatctgcggggaccgctcgtcaggtaaacactatggagtgtatagctgc
gagggctgtaaaggcttcttcaagagaacagtgcggaaggacctgacctatacctgccgc
gacaacaaggactgtctgatcgacaagcgccagcgcaaccgctgtcagtactgccgctac
cagaaatgtctggcctgtggaatgaagagagaagttttgttacactcagccgtccaggag
gagcgccagcgggccaaagaacgcagtgagaacgaggtggagtccaccagcagcgtcaac
gaggacatgcctgtggagaaggtcctcgaggcagagctcgctgtggaacccaagacagag
acctacatcgagaccaacctgggcatgccatccaactcgcccaacgacccggtgactaac
atctgccaagcagccgacaagcagctcttcacgctggtggagtgggccaagaggatcccc
cacttctctgagctgcccctggacgaccaggtcatcctcctacgagcagggtggaacgag
ctcctcatcgcatccttctcgcaccgttcgatagcggtgaaagatgggatcctcctggca
acagggctacacgtccatcgtaacagcgcccacagtgctggagtgggagccatatttgac
agagtgctcacagaactggtgtccaagatgagagacatgcagatggacaagacagagctg
ggttgccttcgggccattgtcctcttcaacccagactctaaaggcttgtcaaacccaggc
gaggtggaggctttgagagagaaggtctacgcctctctggaggcctactgcaaacagaaa
tacccagatcagcctggcaggtttgccaagttgttgctgcggttaccagccctgcgctcc
attggtctgaagtgtctggagcacctgttctttttcaagctcatcggggacacgcccatc
gacaccttcctcatggagatgctagaggcgccccaccaaatgacataa
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