Coregonus clupeaformis (lake whitefish): 121582630
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Entry
121582630 CDS
T08357
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121582630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121582630
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121582630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
PRP4
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_Vps41
WD_LRWD1
WD40_like
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
DUF7779
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
121582630
NCBI-ProteinID:
XP_041754506
LinkDB
All DBs
Position
15:complement(30367648..30377242)
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AA seq
507 aa
AA seq
DB search
MSDDDEAPLVKKTRIFYGSLEEKERERLGRESSGSGKDSVKAGIEAGNINISSGESLELE
EHVSERQSEVLADFERRKRARQITVSTDDAEVKACLRALGEPITLFGEGPAERRERLRNI
LSVVGPDALKKSKKDDERSKRSQEECQQTWYHEGPTTLKEARLWLARYSLPRAVKRLEDA
RAHREIPESTRTVRTQELHKTLRNLSNFCSQIGDDRPISFCQFSPNSKMLVTASWSGLCK
LWNVPDCTLIRTLRGHNTHVGAICFHPQATRTLDDSDVNMASCAADGSVKLWSLDRDEPV
ADIEGHSQRVARVAWHPSGRFLGTTCSYDNSWRLWDLEAQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFGRIWDLRTGRCVMFLEGHLKEIYSIDFSPNGYHAATGSGDNTCKVWD
LRHRKCIYTIPSHQNLVSSIKFQPIDGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGVDMSPDGQLIATCSYDRTFKLWMSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatgatgaagcaccgctggtgaagaagaccaggattttctatggcagtctg
gaggagaaggagagggagaggctgggacgagagtcctctgggtcaggcaaagattctgtc
aaagcaggcatcgaggctggcaacatcaacatctccagtggtgagtcccttgagcttgag
gagcacgtgagtgagcgccagtctgaggtattggcagactttgagcgcagaaagcgagcg
agacagatcacagtatccacagacgatgcagaggtcaaagcttgcttacgggcccttggg
gagccaatcacactgtttggtgaggggcctgctgagagacgagagaggctgaggaatatc
ctttctgtagtgggcccagatgcactaaagaaatctaagaaggatgatgagagatccaaa
cgttcccaagaggagtgtcagcagacgtggtaccacgagggaccgaccactctgaaggag
gcaaggctatggttggccagatactctctgcccagggctgtgaagaggttagaggacgcc
agagctcacagggagattccagaatccacacgaacagtccgaacgcaagaacttcacaag
accctcaggaacctgagtaacttctgcagtcaaatcggtgacgacagacctatatccttc
tgccagtttagccctaactccaaaatgcttgtgactgcatcttggagtggcctgtgtaaa
ctgtggaatgttccagactgcacccttatccgtactcttcggggccacaacacacacgtg
ggggccatctgttttcatcctcaggccactcggactctggacgactctgatgttaacatg
gcctcctgtgctgccgacggctccgtcaaactctggagtctggacagggatgagcctgta
gctgacatcgagggtcactcccagagggtagcacgagtagcctggcacccctctggacgc
ttcctgggcaccacctgcagctatgacaactcctggaggctgtgggacctggaggcccag
gaggagatcctgcaccaggagggacacagtaaaggagtccacgacctgcacttccatcct
gacggctctttggcaggcactgggggtctggattcgtttgggcgtatttgggaccttcgg
accgggcgctgtgtgatgttcctggagggccacctcaaagagatctacagcatcgacttc
tctcccaacggctaccacgcagcaacaggaagtggggataacacctgtaaggtgtgggac
ctgcgtcacaggaagtgcatctacaccatcccctcccatcagaacctggtgtcctccatc
aaattccaacccattgacggtcacttcctcctgaccggggcctatgacaacacagccaag
gtgtggacccacccgggctggtcccccctgaagaccctggcaggccacgagggcaaggtg
atgggcgtggacatgtcccctgacggacagctcatcgccacctgctcctacgaccgcacc
ttcaagctctggatgtcagagtga
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