Coregonus clupeaformis (lake whitefish): 121582741
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Entry
121582741 CDS
T08357
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121582741 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121582741 (nup54)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121582741 (nup54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
121582741
NCBI-ProteinID:
XP_041754742
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Position
15:complement(56792801..56815940)
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AA seq
568 aa
AA seq
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MAFNFGGAATNPASTSGLSFGSFAAKTTAPSAFGFAMTTTSASSGFGTGLAAPGFGTTTT
AAAPAGFGGFGTTTTGFGGLGAGSTTSGAFGGFGTTTTSAAAPGSTFSFAAPASTTGGLF
GNTQNKGFGFSSGLGTGTTTAAGFGTGLGTTLGGGFGGFNIQPQQQQQGSFFGQQAQAPA
QSNQLVHTANALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNQLPPVDFTQENPFCR
FKAVGYSCIPGSKDEDGLVVLALNKKEADVRSQQQQLVESLHKVLGGNQTLTVNVEGVKA
LPDDQTEVVIYVVERSPNGTSKRIPATTLYSYVEQANTKAQLTQLAVFMSVTRTELSPAQ
LKQLLANAPAGVDPIIWEQAKVDNPDADKLIPVPMVGFKELLRRLKIQDQMTKQHQSRVD
IISNDISELQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRV
QLDTIQSELNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYSVDGDLLREIRQHLKQQQE
GLSQLIIVIKDDVEDIKLIEHGLLDRLG
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaactttggcggcgctgccaccaaccccgcaagcacttccggattatcattt
ggttcatttgctgccaaaacaacagcaccctcagcttttggctttgccatgaccaccacc
agtgcctcatcaggatttggtacaggtcttgcagcccctggtttcgggaccaccaccact
gctgcggcacccgctggcttcggcggcttcggcaccaccaccacaggatttggggggctg
ggagccgggagcaccacgtctggtgcttttgggggttttgggacaaccactacatccgct
gctgcgcctgggtccactttcagcttcgccgctcctgcaagcacaacaggaggactgttt
ggtaatacccagaataagggatttgggttctcctctgggctgggcactggtactaccact
gcagctgggtttggaacaggtctggggacaactctaggaggtggatttggtggcttcaat
atccagccacagcagcaacagcaaggaagcttttttgggcagcaggcccaagccccggcc
cagtctaatcagctcgtccacacagctaacgccctgtctgcccccaccctgctgggggac
gagagagatgccatcctggccaagtggaatcagctccaggccttctggggaacaggcaag
ggctacttcaacaaccaactgccccctgtagacttcacacaggagaaccctttctgcagg
ttcaaggcggtgggctacagctgtatcccaggcagtaaggatgaggatggtctggttgtc
ctggccctcaataagaaggaggctgatgtccgtagccaacagcagcagctggttgagtct
ctacacaaggtgctgggagggaaccagactctcaccgtcaatgtagagggagtcaaagcc
ctgcctgatgaccagacggaggtggtgatctatgtggtggagcgttctcctaacggcaca
tctaagaggatcccagctacaacactgtacagctatgtagagcaggctaacaccaaggcc
cagctcacacagctagcagttttcatgtctgttacacgcactgagctctcaccagcacag
ctcaaacagctgctggcgaatgcaccagcaggtgtggatcccatcatttgggaacaggca
aaggtagataaccctgatgctgacaagttgatccccgtccccatggttggtttcaaagaa
ctgctccgcagactgaaaattcaggaccagatgaccaaacagcaccagtccagagtagac
atcatctccaatgacatcagtgaattgcagaagaaccaggcaacaacagtggctaagatc
gctcaatacaagaggaagctgatggatctctctcacagagtactacaggtgctgatcaag
caggagattcagaggaagagtggctatgccatccaggtggatgaggagcacctaagagtg
cagctggacaccatccagtctgaactcaatgcccccacgcagttcaaggggcgtctgaac
gagctgatgtctcagatccggatgcagaaccactttggcgcggtgcgctcagaggaacga
tatagtgtggacggagaccttctcagagagatcagacagcacctgaagcagcagcaggag
ggtctgagtcagctgatcattgtgatcaaagacgacgtggaagacatcaaactgatagaa
catggcctcctggacagactcggctga
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