Coregonus clupeaformis (lake whitefish): 121582805
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Entry
121582805 CDS
T08357
Name
(RefSeq) WD repeat-containing protein 36-like
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121582805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121582805
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121582805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_VPS8
NBCH_WD40
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_LRRK2
Beta-prop_HPS5
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
121582805
NCBI-ProteinID:
XP_041754846
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Position
15:48195192..48211560
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AA seq
894 aa
AA seq
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MPVGSKKGSVIFSGFRALGLYSNHLSHVVRYHKKHREFYIVTAVGNCFHTYNVKKLGIVA
VSNALPEDISYLAADRMLVYVANGKKVSAFARNKEVVHMYTGHGADVHLLLPFGDHIISV
DRDNAVIVWDVESEEEYLQITFDKVSFEVSAVMHPSTYLNKILFGSSQGGLQLWNVKSNK
LLYTFPGWASGVTVLQQTPAVDAVGVGLSSGQIIIHNIKFDESLMKFQQDWGPVTSLSFR
TDGHPVMAAGSPVGHIGLWDLEEKKLVCQMRDAHNTAIAGLTFLHGEPLLITNGADNGIR
VWIFDTAGGGGRLLRSRLGHSAPPTKIQHHGLNGHHILSAGQDGTLQSFSTVHERFNRSL
GHGSINKKKSKKKSLRYDELKLPAITTFASESARQSDWDSIVACHRGYLMTTTWNYQKGS
MGAHKLEPERFNKNRALNVHATAVDITSCGNFVVVGLSSGHIDVYNMQSGMHRGQYGEDK
AHRGAVRGVSVDGLNQLTVSAGADKLVKIWKFKSRKLVHSIDLGTSPATTHLHRDSGMLA
IALDDFTLNVLDMETKRIVRKFSGHRGQVNDMAFSPDGRWLITAAMDCTIRTWDLPSGCL
VDCFLVDSAAVSLTMSPTGDFLASSHVDNLGIYLWSNNTLCSMVSLRPLTADYEPTMIML
PGTCPSQDEEGEGDAELNTEMIEYESPEQLDEKLVTLSLLPDSRWKNLLHLDIIKKRNKP
KEPPKVPKAAPFFMPTIPGLIPQFAPSEGSNQEEQSKIVNFGVLAQKSHFYQLLESAMLS
NKYDGPVGMLKEMGPSGIDAELRGLAPDMGGDVSVLQGFLKMVASMLDSKRDFDLAQAYL
ALFLKLHLRLISQEPGLMEEASRVSEKLEETWTSMQTLFNQSLCLLSYTKSALL
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgggtagtaaaaagggaagcgttatattttcaggcttcagagcattgggactg
tattcgaatcacctctcacacgtggtacggtatcataagaaacaccgagaattctacatt
gtgacagctgtgggaaactgtttccatacgtacaatgtcaagaaacttggaatcgttgct
gtcagtaatgcacttccagaggacatatcatacctagcagctgatcggatgctggtctat
gttgcaaatgggaaaaaagtatcagcatttgccaggaacaaagaggttgttcacatgtac
actggccatggagctgatgttcatctcctgctgccttttggggatcacataatttcagtg
gacagggacaatgctgtcattgtatgggacgtggagtcagaggaggagtacctgcaaata
acatttgacaaagtgtcatttgaagtgtctgctgtaatgcacccaagcacttacctgaac
aagatcctgtttgggagtagccaaggaggtctccagctctggaatgtcaaatccaacaag
ctcctgtacaccttccctggatgggcatcaggagttacagtgcttcagcagaccccagct
gtggacgctgtgggtgtaggcctatcatcaggtcagatcatcatccacaacatcaagttt
gatgagtcactgatgaagttccagcaagactggggcccagtcacttccctctccttcaga
acagatggccatccagtaatggcggctggtagtcctgttggacatattgggctgtgggat
ctggaggagaagaagcttgtttgtcagatgagagatgcgcacaacacagctatcgctgga
ttaacattcctccatggcgagcctcttctcatcaccaatggggctgataacggcattcgg
gtgtggatctttgacacggcgggcggaggaggccgtctactcaggagtcgtctgggacac
agcgccccgcccactaagatccagcaccacggcctgaacggacatcacattctcagtgct
ggtcaagatggtactctgcagtcgttctccactgttcatgagagattcaacaggagttta
ggacatggttccatcaacaagaagaaatccaaaaagaaaagcttgaggtatgacgaacta
aagcttcctgccatcaccacttttgcctcagagagtgcccgtcagagtgattgggacagt
atagtggcgtgtcaccgagggtatctcatgacgaccacctggaactatcagaagggcagc
atgggagcacacaagctggagcccgaacgcttcaacaagaaccgcgctctcaacgtccat
gctacggcagtagatatcacatcatgtggtaactttgtagtggtaggactctcatctgga
catattgacgtttacaacatgcagtctggcatgcatagaggtcaatatggagaggacaaa
gctcataggggggcggtgcgcggcgtgtcggtggatggactcaaccagctgaccgtgagt
gccggagctgacaaactggtcaagatctggaagttcaaatctaggaagttggtccactcc
attgacctgggcacctcacctgccaccacacacctgcacagggacagtggtatgttggcc
atagcgctggacgacttcacgctcaatgttctggacatggagaccaagaggattgtccgc
aagttctctggccatcgtggacaggtcaatgatatggctttcagtccagacggtcgctgg
ttgataacggcagccatggactgtaccatcaggacatgggacctcccctccggctgcctg
gtggactgcttcttggtagactctgctgcagtcagtctgaccatgtcacccacaggggac
tttctggcctcctcccatgtcgacaacttggggatatacttatggtccaacaacacgctg
tgcagcatggtgtcgctgcgccccctgactgcagactacgagcccaccatgatcatgctg
ccaggaacctgtcccagccaagatgaagagggagagggagatgctgaactcaacactgag
atgatagagtatgagtctcctgagcaactggacgagaagctagtcaccctctctctgctg
cccgactctcgctggaagaacctgctgcacctcgatatcatcaagaaacggaacaaaccc
aaggagccccccaaggttccgaaggctgccccattctttatgcccaccatcccaggacta
ataccccagttcgccccctctgaaggctccaaccaggaggaacagtcaaagattgtgaat
tttggagtcctggcacagaagtcccatttctaccaactgctagaatctgctatgctcagc
aacaaatatgatggccctgtggggatgctgaaagagatgggtccgtctggtattgatgct
gagctccgaggcctggcccctgatatgggtggagatgtctctgtcttacaaggcttcctg
aagatggtggccagcatgctggactccaagagagactttgatctggcacaggcctacctg
gctctcttcttaaagctgcatctcagactgatctcccaggaaccagggctgatggaggag
gcatctagagtatcagagaaactggaggagacgtggacatccatgcagacacttttcaat
cagagcctgtgtttgctgtcatacaccaagagtgcactgctttga
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