Coregonus clupeaformis (lake whitefish): 121582834
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Entry
121582834 CDS
T08357
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121582834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121582834
03041 Spliceosome [BR:
cclu03041
]
121582834
03009 Ribosome biogenesis [BR:
cclu03009
]
121582834
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121582834
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121582834
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121582834
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121582834
Complex C
U4/U6.U5 tri-SnRNP related factors
121582834
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
Helicases
121582834
Transfer RNA biogenesis [BR:
cclu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121582834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
121582834
NCBI-ProteinID:
XP_041754902
LinkDB
All DBs
Position
15:complement(50277812..50331499)
Genome browser
AA seq
1036 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTTSTKKKPAIPEKGKSTSKNGKGGKDEFSAAKSKREADNNGTD
EVVFGKKAKLETVSTEEINLADCMPKVKVEPVETVEGCNHEVALPANEEFTQLKPRVGKA
AKEYPFVLDPFQREAILCIDNSQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDTGDSGGSSGGGKWDPKGRKG
GTRGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNN
AVDCLSDDDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
VGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMA
KLEEMYNAIEIPNEESVVTYYKIRQQLAKLSKEIEEFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFSKKANVKAIMGDADPLYVVEVLVHCSKESVKNTATEAAKPAAAGEKGEM
QVVPVMLRLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMSIK
DPGLKKVIQKVEAFEHRMYSHPMHSDPSLEAVYSLCERKALIAGDIKGTKRELKKARTVL
QMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQVT
ALLSVFVFQENASEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLDKFRPHL
MDVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcctttggtgacgatttgttcagcgtgtttgatgaagaacaaacaacttca
actaaaaagaaacccgcgatacctgaaaaggggaaatcaaccagtaaaaatggcaaagga
ggaaaggacgagttctctgcagccaagagtaagcgggaagcagacaacaacgggacagac
gaggtggtgtttggaaagaaggctaaactggagactgtttctacagaagagatcaatctt
gccgactgcatgcccaaggtgaaggtggagccggttgagacagtggaaggatgcaatcac
gaggtggccctaccagccaatgaggagttcacgcagttaaagcctcgtgtggggaaagca
gcaaaggagtaccccttcgttctggatcccttccaacgtgaggccattctgtgtatcgat
aacagccagtcagtgcttgtgtctgcccacacctctgcaggaaagactgtctgtgcagag
tatgccatagctctagctctgagggagaagcagagggtcatcttcaccagccccatcaaa
gccctgagtaaccagaagtacagagagatgtacgaagagttccaggatgttggcctgatg
accggtgatgtcaccatcaaccccactgcctcctgcctcatcatgactactgaaatcctg
aggagcatgttgtaccgagggtcagaggtcatgagagaggtggcctgggtcatctttgat
gagatccattacatgagagatgccgagcgtggcgtggtgtgggaggagaccatcatcctg
cttcccgacaacgtccactatgtcttcctgtccgccaccatcccaaacgccaagcagttc
gctgaatggatctgccacctccacaaacagccctgtcatgtggtgtacacagacttccgg
cccacccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtg
gatgagaacggagagttcagggaggacaacttcaacacggccatgcaggtgctgagagac
actggcgactctggaggcagcagcggggggggcaaatgggaccccaagggacgcaaagga
gggacacgagggccatccaacgtgtttaagattgttaagatgatcatggagaggaacttc
cagcctgtcatcatctttagcttcagtaagaaggagtgtgaggcctatgccctgcaggtg
tccaagctcgacttcaacacagatgaggaaaagaagcttgtggaggaggtgttcaacaat
gctgtagactgtctgtcagacgacgacaagaagctgcctcaggtggagcacgtcctgcct
ctactgaagaggggtataggtattcatcatggaggactgctccccatcctaaaggaaacc
atcgagatcctgttctctgaggggctactcaaggccttgttcgccacggagacctttgcc
atgggcatcaacatgcccgcccgcaccgtcctgttcaccagcgcacgcaagtttgacggc
aaagacttccgctggatcacgtctggcgagtacatccagatgtcaggtcgagctggcagg
agagggatggacgagaggggtatcgtcatcttcatggtggatgaaaagatgagccctgca
gtggggaaacagctgcttaagggctcggcagaccctctgaacagtgccttccatctcacc
tacaacatggttctcaacctgctgcgagtggaggagatcaacccggagtacatgctggag
aagtccttctaccagttccaacactacagggctgtgcccggggtcgtagagaagatggcg
aagctggaagagatgtataacgccatagagatccccaacgaggagagtgtggtgacctac
tataagattcgccaacagctggccaaactgagcaaggagatagaagagttcatccacaaa
ccaaaatactgccttcccttcctccagcctggcagactggtcaaggtcaaaaacgaagat
gctgactttggatggggcgtggttgttaatttctcaaagaaggcaaatgtgaaggccatt
atgggtgatgcagaccctctatatgtggtagaggtgctggtccactgcagtaaggagagt
gtgaagaacacagctacagaggctgccaaacctgctgccgctggggagaagggagaaatg
caggtggttcctgtgatgctccgcctcctgacctccatcagttcagtccgtctctacatt
cccaaagacctgcggccttatgacaacagacagagcatgctcaaatccatacaggaggtg
cagaagaggttcccggatggcgttcccctgctggaccccatcgatgacatgagcattaag
gacccgggcctgaagaaggtcatccagaaggtggaggcgtttgaacacaggatgtactcc
caccccatgcactctgaccccagcctggaggccgtctactccctctgcgagaggaaagcc
ctgattgcaggggacattaaaggaaccaagcgggagcttaagaaggctcggaccgtcctg
cagatggacgagctcaagtgcaggaagcgcgtcctgaggcgtctagggttcgccacttcc
tcggatgtcatcgaaatgaagggccgagtggcctgtgagatcagcagtgctgatgagctg
ctactgactgagatgatgttcaacggcctgttcaacgatctgactgcagaacaggttacc
gctctactcagcgtcttcgtcttccaggagaatgctagcgagatgcccaagctgacagag
cagctggctggaccactgagacagatgcaggagtgtgccaagcgcattgccaaggtgtct
gcggaggctaagctggaggtggatgaggagacctacctggacaagttcaggcctcaccta
atggacgtggtctacacctgggctaacggatccaccttcgcacagatctgcaagatgacc
gacgtctttgaagggagtatcatccgctgcatgcgtcgcctggaggagctgctccgtcag
atgtgtcaagctgccaaggccatcggtaacaccgagctggagaacaagtttgcagagggt
attacaaaaatcaagagggatattgtgtttgctgccagtctatatctgtga
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integrated database retrieval system
