Coregonus clupeaformis (lake whitefish): 121583205
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Entry
121583205 CDS
T08357
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1 isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121583205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121583205
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121583205
mRNA degradation factors
5'-3' decay
Lsm complex
121583205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
121583205
NCBI-ProteinID:
XP_041755334
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All DBs
Position
15:3471577..3475245
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AA seq
154 aa
AA seq
DB search
MRFTSRPKMNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLQQTVERIHV
GKRYGDIPRGIFIVRGENVVLLGEICVCIPVKDLEKESDTSLQQVCIEDILEEQRLQQQS
RQEAEKTKHLALKERGLVMPRPDIMDEYGVQHQY
NT seq
465 nt
NT seq
+upstream
nt +downstream
nt
atgagatttacaagccgaccaaaaatgaactacatgccaggaacagccagcctcatcgag
gatatcgataaaaaacatctcgtcctgctcagagatggaagaacattgatcggctttctc
agaagcattgatcagtttgccaacctggtgctacagcagacggtggagcggatccacgtg
ggcaagaggtatggagacatccctcgaggaatcttcatcgtcaggggagagaacgtcgtc
ctcctgggggagatctgtgtgtgtatacctgtgaaggacctggagaaggagagtgacacc
agtctgcagcaggtgtgtatcgaggacatcctggaggagcagcggctgcaacagcagagc
aggcaggaggcagagaagaccaaacacctggccctgaaggagagaggcctggtcatgccc
agaccagacatcatggacgaatacggagtacagcaccaatactga
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