Coregonus clupeaformis (lake whitefish): 121583553
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Entry
121583553 CDS
T08357
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121583553 (rc3h2)
04121 Ubiquitin system [BR:
cclu04121
]
121583553 (rc3h2)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
121583553 (rc3h2)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121583553 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_2
zf-RING_UBOX
zf-CCCH_4
zf_CCCH_4
zf-CCCH_UNK
Prok-RING_4
zf-C3HC4
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
121583553
NCBI-ProteinID:
XP_045081144
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Position
15:51111557..51133210
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AA seq
1099 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHKPISLGCSHTMCKTCLHKLHRKACPFDQTAISTD
IDLLPVNCALLQLVGAQVLESQPVTLSSAVEVEHYEVCRVCVEELALYLKPISGGKGVVT
LSPSALSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEEGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLIHKSHMQSIIDKLQSPESFAKSVQELIIVLQRTGDPANLNSLRPHLELLANI
DHNPDATSPSWEELESVMLAVKVMVDGLVEFIQNFSKKSHETPQPQPNSKYKTSMCRDLR
QQGGCPRGSNCTFAHTQDELEKYRMRNKKISGVGRSFPLAQGSMGSEGGDSGEEACAGGL
KGSDKVGLGSLTERSTHPQLIPRGGDMMEEMKRERSVLNGSNGFTGSSRSSSGSMEQKSV
SPPKTPVNHSSAPSPHGMGSRVECGSGHPKQGHFLMRGPPPQPPPHQPQSSELYYQDPRP
PYDTQPYQPASNYYTSTMHPHKPCMARFLRSSHVLESSLPPSMAPPYSEQHPSFPQPRER
AGPSPYGPPPAPQYGPLAPAHGGYAPLYDSRRIWRPQLYHREDARSNSLPPEVLHSSVYQ
PPLRERYASLDSPYCSAGEHRAALHRDSYGRVPLGYEDLFKRKQEQWAHHHHVNMNRSSQ
SSPVFTVDFGAEHDSGGDQCMNCKYRGEESLAHYSPWSCGTISTCISPFEPEHHNASAHS
CSQHSAVDNGEGKRWLHTFEPYRRLKDEDPIIPFGEGPIISKWGAISRASRTGYHTTDPV
QATACQRSNSTTPINFRDYGPHIGHGDYRWSSRGSDSSSHSSFLESDQLGVCELAARERS
FSSGEKAGAGDLLQTDYCKDTTESEPDRDIELELSVLDMEDSDMQDNSQQSEESLELRDP
HLLTPPSSEPQRSQTDKLSADKMEAHLLKKMAFRKSLSPGGLGSGGLSVGKLMMRTGPPR
LGDMGPRPNTGPEMLLNGS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcggcccaatggacagagttcctctcctgccccatctgctacaatgag
tttgacagcagtggccacaagcccatcagtctgggatgctcacacaccatgtgtaagacc
tgtctgcacaagctgcaccgcaaggcctgccccttcgaccagacagccatcagcactgac
attgacctcctgcccgtcaactgtgccctgctacagctggtgggagctcaggtcctggag
tcccagcctgtgactctgagcagtgctgtggaggtagagcactatgaggtgtgcagggtg
tgtgtggaggagctggctctctatctcaaacccatcagtggaggaaaaggtgtggtgacc
ctcagtccgagtgcgctaagtcgacccatgcagaggaagctggtgacactggtcaactgc
cagctggtagaagaggaggggcgtgtacgtgcggtgcgggcgggccggtctctaggggaa
cgtaccgtcacagagctcatcctgcagcaccagaacccacagcagctctctgccaacctg
tgggccgccgtaagggcacggggatgccagttcctggggcctgcgatgcaggaggatgct
ctaaagctggtgttgctggctctagaggaaggctcagctttgtccaggaaggtgctggtg
ctgtttgtggtccagaagctggaggctaggttccctcaggcctccaagacctccattgga
cacgtagtccaactgctctacagagcctcctgctttaaggtgacaaagcgtgacgaggac
tcatcgctgatgcagctaaaggaggagttccgtacctatgaggcgctgcgccgcgagcac
gacgcccagatcgtacacatcgccatggaggcggggctccgtatctcacctgagcagtgg
tcctctctgctctacggagacctcatccacaagtcacacatgcagtctatcattgataag
ctccagtccccagagtcctttgctaagagtgtccaggagctgattatagttctacagaga
acaggagaccctgctaacctgaacagcctcagaccccacctggaactactggccaacatc
gaccacaacccagatgcgacgtctccatcgtgggaagagctggagagtgtgatgctggct
gtgaaggtgatggtcgatggtctggtggagtttatacagaacttcagtaagaagagccac
gagacaccacagccacagcccaacagcaagtataagactagtatgtgtcgagacctccgg
cagcaggggggttgtcctcgaggatccaactgcaccttcgcacacacacaggacgagcta
gagaagtacagaatgagaaacaagaagatcagtggcgtaggccggtccttccccctagcc
caggggagtatgggtagtgagggaggcgactcaggagaggaggcgtgcgctgggggacta
aagggctcagacaaggtggggttggggtccctaacggagcggtccacacacccccagctc
atccccaggggaggcgacatgatggaagagatgaagagggagaggtctgttcttaacgga
tccaatggattcacaggctccagccgctcctcatctggctctatggaacagaagtctgtt
tctcctccaaagacacctgtcaaccactcctcagctccttctccccatggaatggggtct
agggtagagtgtggctctggtcatcccaaacaagggcacttcctaatgagaggaccccct
ccccagcctcctccccaccagcctcagtcctctgaactgtactaccaggacccccgacct
ccctacgacacacagccctaccagccagccagtaactactacacctctacaatgcacccc
cacaaaccctgcatggcccgcttcctgcgttccagccacgtcctcgagtcctctctgccg
ccttccatggcccctccgtactccgagcagcacccctccttcccccaaccacgggagcgc
gcgggtccttctccctacggccccccaccggccccccagtacgggcccctggccccggcc
catggtggctacgccccactgtatgacagccggcgtatatggaggccccagctgtaccac
cgtgaggatgccaggagtaactccctgcctccagaggtgctgcactcctctgtgtaccag
ccccccctccgagagcgctatgcctccctggacagcccctactgctcagcaggagagcac
agagcagcgctacacagggactcttatgggcgtgttcctcttggatacgaggatctgttc
aagcggaaacaggagcaatgggcacaccatcaccacgtcaacatgaacaggtcctcccag
tcctcccccgtcttcaccgtagactttggtgcagagcatgacagtggaggtgatcagtgt
atgaactgtaagtaccgtggagaggagagtctggcccactactctccctggtcctgtgga
accatcagtacctgcatcagcccctttgaaccagagcatcacaacgcctcagctcactcc
tgctcccaacactcagcagtagataatggtgaagggaaacggtggctacacacatttgag
ccgtaccgccgtctgaaagacgaggaccccatcatcccatttggagagggacccatcatc
tctaaatggggggctatctcccgcgcctcccgtacagggtaccacaccactgaccctgtc
caggccacagcctgccagagaagcaacagcaccacccccatcaacttcagagattatggt
ccacacatcggtcacggtgactacaggtggagctcccgtgggtctgactcatccagccac
tcaagtttcctagagagtgaccagctgggagtgtgtgagcttgccgcccgtgagcgctcc
ttcagcagtggagagaaggctggtgcaggagacctgctgcagactgactactgtaaggac
acgacagagagcgaaccggacagagacattgagctggagctgtctgtactagacatggag
gacagtgacatgcaggacaacagtcaacaatctgaggagtcccttgagctgagggacccc
cacctcctcacccctcccagcagtgaaccccagaggagccagacagacaagctgtccgct
gacaagatggaggctcacctgctgaagaaaatggccttcaggaagtctctctcccctggt
ggtctgggctcaggaggcctcagtgtggggaagctgatgatgaggaccggccctccaagg
ctgggggacatgggccctcgccccaacacaggccctgagatgcttctcaacgggagttga
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