Coregonus clupeaformis (lake whitefish): 121583560
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Entry
121583560 CDS
T08357
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121583560
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121583560
BRITE hierarchy
Motif
Pfam:
HMG_box
HMG_box_2
UbiD
MoCoBD_1
DUF2408
Motif
Other DBs
NCBI-GeneID:
121583560
NCBI-ProteinID:
XP_045070996
LinkDB
All DBs
Position
Unknown
AA seq
657 aa
AA seq
DB search
MTKTEQDESTCMETLLSKDWKEKMERLNTSEILGEVKGTPESLAEKEHQLSTMITQLISL
REQLLAAHDEQKKLAASQMEKQRQQMELARQQQEQYYEEGCSMIARQQQQLLQQQHKINI
LQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGISYKPGDNYPVQFIPSTMA
AAAASGLSPLQLQQLYAAQLASMQVSPGAKMPPLPQPPNNSGPISPSGLKNDKRSSSPIT
QIKEEGTQPLNLSARPKTAEPVKSPTSPTHSLFTGSKTSPNSLSKSGIPSPLGGMGRGSS
LDILSSLNSTALFGDQDAVMKAIQEARKMREQIQREQLQHHQQGMEAKLSALTGMGLNNC
SRADKERAHFESLGHHLSKLGEDGKIGHRVIDLTRPEDLDGWKALNGSGTGADKPQQYYC
WPTGGASTAEARVYREARGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKI
LGSRWKSMTNQEKQPFYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMM
RSRRQEMRQFFTVGQQPQIPISTSAGVVYPGAITMATTTPSPHMTSECSSASASPEPAIP
VIQSTYNMKIEPVAMLTNDPIINGVVDEMDMYEDFDEEPKSDYSSETETLEPIVSAN
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagacagagcaagatgaatccacttgcatggaaacacttctgtcaaaagactgg
aaagagaagatggaaaggctcaacactagtgagattctgggagaagtaaaaggtactcca
gagagcctggcagagaaggagcaccagctgagcacaatgatcactcagctgatcagcctg
agagagcagctcctggccgcccacgatgagcagaagaagctggctgcctcacagatggag
aaacagaggcagcaaatggagctggctcgccagcagcaggaacagtattatgaagaaggg
tgttccatgattgccagacaacagcagcagcttctgcagcagcagcacaaaatcaatatc
ctccagcagcagattcaggtccagggtcacatgcctccgctcatgatccccatttttcca
cacgaccaacgcaccctggcagcagccgctgcagcccagcagggctttctcttcccaccg
ggaatctcttacaagccaggtgataactacccggtgcagttcattccatccacaatggca
gctgcggcagcgtcaggactcagccccctccagcttcagcaactgtatgccgcccagctt
gccagcatgcaggtctctcctggagccaagatgccgccactcccccagcctcccaacaac
agcggacccatctccccctccggcctgaagaacgacaagagatcctccagccctatcact
caaatcaaggaggagggaacgcagcctctcaacctgtctgcccggcccaagacggctgag
ccagtcaagtcccccacgtcccccacacacagcctgttcacgggcagcaagaccagcccc
aacagcctgtccaagagcggcatccccagtcccctcggaggcatgggccgtgggtcttct
ctggacatcctgtccagcctgaactccacagcgctgttcggggaccaggatgcggtgatg
aaggccatccaggaggccaggaagatgagagaacagatccagagagagcagctgcagcac
caccagcagggcatggaggccaagctctctgccctcacaggcatgggcctcaacaactgc
agcagggctgacaaggagcgggcacactttgagagccttggtcaccaccttagcaagctg
ggcgaggatggcaaaattggtcacagagtcatcgacctcaccaggccagaggatctggat
gggtggaaagctctgaatggctctggtaccggagcagataaaccacaacagtattattgt
tggcctacaggaggcgccagcacagccgaggcgcgggtatacagggaagcccgggggagg
aacagcaacgagccccacatcaagagacccatgaacgccttcatggtgtgggccaaagat
gagcgccgcaagatcctccaagccttcccagacatgcacaactccaacatcagcaagatc
ctgggctctcgctggaagtctatgaccaaccaggagaagcagccgttctatgaggagcag
gcccgtctcagtaagatccacctggagaagtaccccaactacaagtacaagccccggccc
aagaggacctgcatcatcgacgggaagaagctccgcatcggcgagtacaagcagatgatg
cgctcacgacggcaagagatgaggcagttcttcactgtggggcaacaaccgcagatcccc
atcagcaccagcgccggcgtggtctaccctggggccataaccatggcaacgaccacaccc
tcccctcatatgacgtcggagtgctccagcgcctcagcgagcccggagccggccattccc
gtcatccagagcacctacaacatgaagatagagcccgttgccatgttaaccaacgacccc
atcatcaacggagtggtagatgagatggacatgtacgaggactttgacgaggagcccaaa
tcggactacagcagtgagactgagacactggagcccatcgtcagcgccaactga
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