Coregonus clupeaformis (lake whitefish): 121583774
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Entry
121583774 CDS
T08357
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1G-like
KO
K04854
voltage-dependent calcium channel T type alpha-1G
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121583774
04020 Calcium signaling pathway
121583774
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121583774
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121583774
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
121583774
NCBI-ProteinID:
XP_045082386
LinkDB
All DBs
Position
1:10001842..10208605
Genome browser
AA seq
2362 aa
AA seq
DB search
MLVILLNCVTLGMFQPCEDHDCESERCKILEDFDDFIFAFFAVEMVIKMVALGIFGKKCY
LGDTWNRLDFFIVLAGMLEYSLNLQNVSFSAVRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLPHNFSLPLSVELGNYYHTENDDES
PFICSMPRENGMRLCSSVPTLYEEGGIQCQVDMNSYNSTDNTTCVNWNQYYSNCSGGHVN
PFKGAINFDNICYAWIAIFQVITLEGWVDIMYFVMDSHSFYNFIYFILLIIIGSFFMINL
CLVVIATQFSETKQRESQLMREQRIRFLSNASTLASFSEPGSCYDELLKLLVHVIRNGFR
QVAHVCRAVMRRAGMNIAASPPALESERERGSQRKRRKTSRQGSVVSRKVSMSVHYLVHQ
NHHHHYHYHLVNGSVRGRLGGRGVAGVGGGGGDVETGSHSNNGGTGRLMLGPPPLPTSDV
NLATPVSPDNPAPETNGGDSSSVRSTFHTDCHLEPSTPTALAPTPSPFSLTPTPMSRPMK
RNSVPFAGSGPKNYPTLQPRALMESRSGSVTASTISNINLNIPPLPLERRSQSFVDTHTP
TAQLSCRDLSAIGTLDPSFTFDPESCPYCAKALAGESEGTDGNETPGDSDSEGIYEFTPD
LQHRDRRDRRDSRQPRKRQRKLGTTVGRVVRAWRLVCDTFRKIVDSKYFGRGIMIAILIN
TLSMGIEYHEQPEELTNVLEISNIVFTSLFALEMLLKMLVYGPFGYIKNPYNIFDGIIVV
ISVWEIVGQQGGGLSVLRTFRLMRVLKLVRFMPALQRQLVVLMKTMDNVATFCMLLMLFI
FIFSILGMHLFGCKFGSERDGDTLPDRKNFDTLLWAIVTVFQILTQEDWNKVLYNGMAST
TPVAALYFIALMTFGNYVLFNLLVAILVEGFQTEAPPVSPPSTTPLHDATAVETNQGEDS
KSVSEADLSSRSLEDVNGSGRDVSVSPVVPINGHVDLKTSLTPPLITHTAATPMPVPKLP
AVGDPAMGYESRRGSNISMDLACYDKSPTSARSTSPYAPWSSASGWTSRRSSWNSVGRAP
SLKRTKRQSGERRSLLSGEGGSSSEDEEGVGGGTSEGDDESLCRTDSMSQSQQRHRRMES
VETRGSIDLAPDTLLQVPFLYRSTSMHSSRPPSLGGLRAPEHSDCNGKGTLAPGGAPTQL
SLEDNTEDDAAEEEVMGRFARLLRWLERKQPEWCRKRDTWSLYMLPPDSRFRMACNKIIT
HKMFDHIVLVIIFLNCITIAMERPRIEAYSVERIFLTLSNYIFTAIFVAEMTVKVAALGW
LFGDKAYLRSSWNLLDGMLVMISAIDVLVSLVSNSSPKILGMLRVLRLLRTLRPLRVISR
APGLKLVVETLMSSLKPIGNIVVICCAFFIIFGILGVQLFKGKFFACQGEDVRNVTNKSD
CMMANYKWVRQQYNFDNLAQALMSLFVLASKDGWVDIMYDGLDAVGVDQQPQLNHNPWML
LYFISFLLIVSFFVLNMFVGVVVENFHKCRRSQEAEEAKRREEKRLKRMEKKRRKAQSKP
YYSDYSSMRLLIHKMCTSQYLDLFISIVIGLNVITMAMEHYQQPKELDEALKICNYIFTL
IFVLESVFKLVAFGFRRFFKDRWNQLDLAIVLLSIMGITLEEIEVNASLPINPTIIRIMR
VLRIARVLKLLKMAVGMRALLDTVMQALPQVGNLGLLFMLLFFIFAALGVELFGDLICDE
LHPCEGLGRYATFKNFGMAFLLLFRVSTGDNWNGIMKDTLRDCQQENAGTCYNTVVSPIY
FVSFVLTAQFVLVNVVIAVLMKHLEESNKEAKEEAELEVELQLELQHGGQGGSGRSPQLS
PLAPGMEVGGPGGSPWRSPEREIQRRGSVMDSPPADVTTRDISADPLLVLEPPLEMELLD
PGEPLEDNLLSVRKSMVGRTHSLPNDSYMFLPLEPFGSPGAGLAPGLASQTQAAGPQHIE
TLNEALSGSCTSVRSQPEDSSKQLAVPIDFFRPISPHSLSHSQSIHTLSRTLRRQVAISN
DSQEALCSDGGEGKEVVLDVASLALSLSSSSSSSSSHLHHQPALRLVPATPGASPQPSRP
SSVHTQHTSSPSSPSLPPPPLPSTRPWREEEASADQEVSLITRAGLAGIEDVIGVGLGSE
DGGLEGSYQGYWVGRRAGCGPCLRQLKRFHSADTQGRSVLAPRPRPLSWLDDLRRHSVEV
CSSVESSPQRSTISTSSGFVSRADSLQIQSQTTTQTLPSPRRKKKMSPPCISVDPPDGLE
PQSGLNPAPGGLGGLGMPPPLPGRETSCLRRRAPSSDSKDSFDLGVGEGLGLGLGQEGGG
SNPNPKLLTLPSFSFEKTSSEH
NT seq
7089 nt
NT seq
+upstream
nt +downstream
nt
atgctggtgatcctgttgaactgtgtcaccctggggatgttccaaccctgtgaggaccac
gactgtgagtcagaacgatgcaagatcctggaggacttcgatgactttatctttgcattc
tttgcggtggagatggtcatcaagatggtggcactgggcatctttggcaagaagtgttat
ctaggagacacctggaacagacttgacttcttcatcgtactggccgggatgttggagtac
tctctgaacctgcagaacgtgagtttctcggcggtgagaacggttcgagttctgagaccc
ctccgagccatcaacagggtacctagtatgcgtatcctggtgaccctcctcctggacacc
ctgcccatgctggggaacgtcctgctactctgtttcttcgtcttcttcatcttcggcatc
gtgggcgtgcagctgtgggcggggctactgaggaaccgctgcttcctgccccataacttc
tcactccctctatccgtcgaactaggcaactactaccacacggagaacgacgacgagagc
cccttcatctgctccatgcccagggagaatggcatgcgtctgtgttcctctgtgcccacc
ctgtatgaggagggaggtatccagtgccaggtggacatgaactcctacaacagcacggac
aacaccacctgtgtcaactggaaccagtactatagtaactgctctggaggacacgtcaac
cccttcaaaggggccatcaactttgataacatctgctacgcctggatcgccatctttcag
gtgatcactctggagggatgggtggacatcatgtactttgtgatggattctcactccttc
tacaacttcatctacttcatcctcctcatcattattggctctttcttcatgatcaacctg
tgtctggtcgtcatcgccacccagttcagtgagacaaagcagagggagagccagctgatg
agggaacagcgcatccgtttcctgtccaatgctagtaccctggcctccttctctgagccg
ggctcctgctacgacgagctcctcaaactccttgtccacgtcattcggaatgggttcagg
caggtggcccatgtctgccgggccgtgatgcgccgtgctgggatgaacattgcagcctct
ccccctgccctggagagcgagagggagagggggagccagagaaagaggaggaagacttcc
agacagggttctgtggtctccagaaaagtgtctatgtccgttcattacttggttcaccaa
aatcaccatcaccattatcactatcacttagtgaacgggagtgtgagagggagactaggg
gggagaggggtggcgggggtcgggggaggaggaggggatgtggagacgggttcccatagc
aacaacgggggcactggacgtctcatgctgggtcctcctccattgccgacctctgatgtg
aacttggcgaccccggtgtcaccagacaatcccgctccggaaaccaacggtggtgactcg
tcatcagtgcggagtacattccacacagactgccacctggagcccagcacccccactgcc
ctcgcccctacccctagtcccttctccctgacccctacgcccatgtccaggcctatgaag
aggaactcagtgcccttcgctggttccggacctaaaaactaccccaccctacagcccagg
gcactaatggagtctagaagtggcagtgttacagctagtaccatcagtaatataaacctc
aatataccacctctacccctggagagaagatcacagagttttgtagacacacacaccccc
acagcccagctctcctgccgtgacctgagtgccatcggaaccctggacccgtcgttcacc
tttgaccctgagtcgtgcccctactgtgccaaggctctggcaggggagtcagagggcaca
gacggaaatgagacccctggggactcagacagtgagggcatctacgagttcaccccggac
ctccagcacagggaccgcagggaccgtcgggatagccgtcagcccaggaagaggcagcga
aagctgggtaccacggtggggagagtggtccgggcctggaggctggtgtgtgataccttt
aggaaaatagtggacagcaagtattttggaagagggatcatgatcgccattctgattaat
acgctgagtatggggatcgagtaccacgaacagcctgaggagctgaccaatgtgttggag
atcagtaacatagtgttcaccagtctgtttgcattggagatgttactcaagatgctggtc
tatggaccatttggttacatcaaaaacccctacaacatcttcgacggaatcatagtggtt
atcagtgtgtgggagatcgtgggccagcagggcggtggtctgtctgtgttgcgaaccttc
agactgatgcgtgtgttgaagctggtgcgcttcatgcctgctctgcagagacagctggtg
gtgctgatgaagaccatggacaacgtggccaccttctgtatgctactcatgttgttcatc
ttcatcttcagtatcctgggcatgcatctgtttggctgtaagtttggatcagagagagat
ggagacactctaccagacaggaagaactttgacactctgctctgggccatcgtcaccgtg
tttcagatcctaactcaggaggactggaacaaggttctttataatggtatggcctccacc
actcctgtggctgctctctacttcatcgccctcatgacctttgggaactatgtcctcttc
aacctgctggtggccatcttggtcgagggcttccagactgaggccccccctgtctctcca
ccctctacaacccctctgcacgacgccacggctgttgagactaaccagggagaagactca
aagtcagtgtcagaggctgatttatcatcgaggagtttggaggatgtgaacggcagtgga
agggatgtgtctgtctccccggtagtccctataaacggtcatgttgacctgaagaccagt
ctgacccctcctctgatcacccacactgctgccacccccatgcccgttcccaagctgcct
gccgtgggtgaccctgctatgggctacgagtcccgacgaggcagtaacatctccatggac
ctagcctgctatgacaagtctccgaccagtgcccgtagtacctccccttacgccccgtgg
agctctgccagtggctggaccagccgtagatcaagctggaacagcgtaggccgtgccccc
tcgctcaaacgaacaaagcgtcagtctggcgaacggcggtcgctcctctccggagagggt
gggtccagttcggaggatgaggagggggtaggaggggggacttcggagggagatgatgag
tccctgtgtcgtaccgactccatgtcccagtcccaacagcgacacaggaggatggagtct
gtggagaccagggggtccatagacctggcccccgacacactgctacaggtgcccttcctg
tatcgctcaaccagtatgcacagctccagacccccctcgctaggaggcctgagagcccca
gaacacagtgactgtaatgggaaaggcactctggcccctgggggggccccgacacagctc
tccctggaggacaacacagaggacgacgcggcagaggaggaggtcatgggtcgtttcgcc
aggctgttacgctggctggagcggaaacagccagagtggtgtcgaaagagagatacctgg
tccctgtacatgttacccccagactccaggtttcggatggcatgcaacaagataataacc
cacaagatgtttgaccacatcgttctggtcatcatcttcctcaactgcatcaccatcgcc
atggagaggccgagaatagaggcatatagcgtggagcgcatcttcctcacgttatccaac
tacatcttcacagcgatcttcgtggcggaaatgacagtaaaggtggctgcgctgggctgg
ttgtttggtgataaggcctacctgaggagtagctggaaccttctagacgggatgttggtg
atgatctcagccatagacgtcctggtctcattggtgtccaacagcagtcccaagatactg
ggtatgctccgggtactgcgcctgctacggacgctcaggccactacgtgtgatcagcaga
gccccaggtctgaagctggtagtggagactctgatgtcgtctctgaagcccatagggaac
attgtggtcatctgctgcgctttcttcataatctttggtatcctgggagtacagctcttc
aaggggaagttctttgcgtgtcagggagaggacgtgagaaacgtcactaacaagtcagac
tgcatgatggccaactacaaatgggtcagacagcagtacaacttcgacaacctggcacag
gctctgatgtctctgtttgtgctggcctctaaggatggttgggttgatatcatgtatgat
ggattagatgcagtgggagtcgaccaacagccgcagctgaaccacaacccatggatgctt
ctctacttcatctccttcctgctcatcgtcagcttcttcgtgctcaacatgttcgtgggc
gtggtggtggagaacttccacaagtgccggcgcagccaggaggccgaggaggccaaacgc
agggaggagaagagactgaaacggatggagaaaaagagacggaaagctcagagtaagcct
tactattcggactactcctccatgcgtctcctcatccacaagatgtgcacctcccagtat
ctggatctcttcatttccatcgtcatcggactcaacgtcatcaccatggcgatggaacac
taccaacagcccaaggagttggacgaggcgctgaagatctgtaactacatcttcaccctc
atcttcgtcctggagtctgttttcaagctggtggccttcggcttccggcgcttcttcaag
gacaggtggaaccagctggacctggccatagtgttgttgtccatcatgggcatcactctg
gaggagattgaggtcaacgcatcactgcccatcaaccctaccatcatcagaatcatgaga
gtactgaggatagcaagagtgctgaagctactgaagatggcagtggggatgagagcgttg
ctggacactgtcatgcaggccctgcctcaggtggggaatctgggtcttctcttcatgctg
ctgttctttatctttgcagcactgggagtggagctgtttggtgacctcatttgtgatgag
ctgcacccttgtgagggtttggggcgctacgctacgtttaagaactttggcatggccttc
ctgctgctgttcagagtttccacaggagacaactggaatggcattatgaaggacaccctg
cgagactgtcaacaggagaatgcaggtacctgttacaacacggtcgtctctcccatctac
ttcgtctccttcgtgttgaccgcccagtttgtcctggtcaacgtggtcatcgccgtcctc
atgaagcacctggaggagagcaacaaagaggccaaggaggaggctgagctggaggttgaa
ctacagctggagctccagcatggaggacagggaggcagtgggagatcaccccagctaagc
cctctggccccgggcatggaggtgggcggacccggggggtccccctggaggtctcccgag
agggagatccagagaaggggcagcgtgatggattctcccccagcagatgtcactacaaga
gacatcagcgctgatcccctgctagtcctggagccaccgctggagatggagttactcgat
cctggggagccattggaggacaacctgctgagcgtacggaagtcaatggtgggccgcacc
cactccctacccaacgacagctatatgttcctgcctctggagcccttcggatccccagga
gccggcctggcccctggtttagcctcacagacacaggctgcagggccacagcacatagag
accctcaacgaagccctgtcaggctcctgtacctcggtgcggtcccaaccagaggacagc
tccaagcagttggctgttcctatagacttcttcagacccatcagtcctcacagcctttca
cactcccagagtatacacacactcagtcgcaccctccgcagacaggtagcaatatctaat
gactcccaggaggccctgtgttctgacggaggggagggtaaggaggtagtcctcgatgta
gcttccctagccctctccctttcctcctcttcctcttcctcgtcctcccatcttcatcac
cagcctgctctccggctggtccctgccaccccaggggcatcccctcaaccgtcacgcccc
agcagtgtccacacccagcacacctcctccccctcctccccctccttaccccctcctccc
cttccctccactcgcccctggagagaggaagaggcctcggccgatcaggaagtgtcgtta
atcaccagagcggggctggcgggaattgaggatgtcatcggggtcggattggggtcagag
gacggaggtctcgagggcagttaccaaggttactgggttggtcgtcgtgcggggtgcggg
ccgtgcctgaggcagttgaagaggttccacagtgctgacacccaggggcggagcgtcctt
gcgccccggccacgcccactgtcctggttggacgatcttcgtcgccactcagtggaggtg
tgttcgtctgtagagtccagcccacagcggagtacaatatccacgtcctcagggttcgtc
tcccgagcagacagcctccagatccagtcccagaccaccacacagaccctgccctctccc
cgacgcaagaaaaagatgagccccccgtgtatctccgtagacccccctgatggactggag
ccccagtccggcctcaaccctgccccgggagggttggggggcctggggatgccccctccc
ttacccggccgggaaacctcctgtctaaggagacgggctccctccagtgactccaaggac
tcctttgacctgggggtaggggaggggctggggcttgggctgggccaggagggaggtggg
tccaaccccaaccccaagctgttgactctgccgagcttctcctttgagaaaacaagctct
gagcactga
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