Coregonus clupeaformis (lake whitefish): 121584320
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Entry
121584320 CDS
T08357
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
cclu04137
Mitophagy - animal
cclu04144
Endocytosis
cclu04340
Hedgehog signaling pathway
cclu04350
TGF-beta signaling pathway
cclu04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121584320 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
121584320 (smurf1)
04350 TGF-beta signaling pathway
121584320 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121584320 (smurf1)
04137 Mitophagy - animal
121584320 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
121584320 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121584320 (smurf1)
04121 Ubiquitin system [BR:
cclu04121
]
121584320 (smurf1)
03029 Mitochondrial biogenesis [BR:
cclu03029
]
121584320 (smurf1)
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
121584320 (smurf1)
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
121584320 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
121584320 (smurf1)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
HECT type E3
121584320 (smurf1)
Mitochondrial biogenesis [BR:
cclu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121584320 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
121584320
NCBI-ProteinID:
XP_045071885
LinkDB
All DBs
Position
Unknown
AA seq
731 aa
AA seq
DB search
MSGPGSRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISVWNHKKIHKRQGAGFLGCIRLLSNAISRLTDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDGMGSGGPVVDCRGLLENEGPVFEGCFSEEPLPYSDPTGA
AGGGTCPLDSPNQENRLQAQRIRGQDSQRHTHTPQNRPHGNQSPDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLTSVSCEELGPLPAGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISQHSQEKESSRPLDGGGGREMEVGGEEEEGGGGGGEVTLRYERDLVHKLKLLR
HELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGLDYGGVARE
WLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSVNPDHLSYFHFVGRVMGLAVFHSHYI
NGGFTLPFYKQLLGKPIMLQDLETTDPELHKSLVWILENDISSVLDHTFCVEHSAFGKFL
QHELKPNGRNLPVTEDNKKEYVKLYVNWRFMRGIEAQFLALQKGFSELIPQHLLKPFDHK
ELELIIGGLGKIDLPDWKSNTRLKHCAVDSNVVRWFWEAVESFTEERRGRLLQFVTGSTR
VPLQGFKALQGSTGSAGPRLFTIHLIEANTDNLPKAHTCFNRIDIPPYESYEKLYEKLLT
AVEETCGFAVE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtcctgggtctcgaaggaacgggtccagcatcaaaatccggctgacagtatta
tgtgccaagaaccttgcaaagaaagacttcttccggctgccggacccatttgctaaggta
gtggtggatggatcaggacagtgtcattctacagacacagtgaagagtactctagacccc
aaatggaaccaacactatgacctgtacatagggaagacagactccatcaccatcagtgtg
tggaaccacaagaagatccataagaggcagggcgccgggttcctgggctgtatacggctg
ctgtccaacgccatcagcagactgacagacaccggctaccagcggttggatctgtgtaag
ctgaacccatcagacagtgatgcagtacggggacagatcgtagtgagtctccagaccaga
gatggtatgggcagtggaggacctgtggtcgactgtagaggactgttagagaatgaaggg
cctgtgtttgagggctgtttcagtgaggagccgctgccgtactcagaccccacgggcgcc
gctgggggcgggacctgtccactggattcacccaaccaggagaaccggctccaggctcag
cgaatcagaggccaggattcccaaagacacacccacacccctcagaaccgaccgcatggc
aaccaatcacctgatctgcctgagggatacgagcagcgcaccacggtgcagggacaggtg
tattttcttcacacacagacgggagtcagcacctggcatgacccacgcatacccagggac
ctgaccagtgtgagctgtgaggagttgggtccgctgccagccggctgggaggtgaggagc
acggtgtcgggacgtatctactttgtggaccacaacaaccgaaccacgcagttcactgac
ccccgactacacaccatcatcagccaacactcccaggagaaggagtcgtctcggccgctg
gatgggggaggcgggagagagatggaggtggggggtgaggaggaggaggggggaggagga
ggaggcgaggtgacactgcgttatgagagagacctggtccacaaactgaagctgctgcga
cacgagctgtcgctacagcaaccacaagccggacactgtcgcatagaggtctcacgagaa
gagatctttgaggagtcttatcgtcagatcatgaagatgagaccaaaggatctgaagaaa
cgactgatggtgaagtttagaggagaggaaggactggactacggaggagtggcaagggag
tggctgtacctgctgtgccatgagatgttgaacccgtactatggcctgttccaatactca
acagacaacatttacacactacagatcaaccccgactcctctgtcaaccctgaccacctg
tcgtatttccactttgtgggtcgtgtgatgggcctggcagtgttccatagtcactatatc
aacggaggcttcaccctgcccttctacaagcagctgctggggaaacccattatgctccaa
gacctggagaccaccgatcctgaactacacaagagtctggtctggatactggagaatgac
atctcgtcggttctagatcatacgttctgcgtggaacacagtgccttcgggaagtttctt
caacatgagctgaaacccaacgggcgcaacctcccggtaaccgaggacaacaaaaaggag
tatgtcaagctttatgtcaactggaggtttatgagggggatagaggctcagttcttagct
ctgcagaaaggattcagcgaactgatccctcaacacctcctcaaaccatttgaccacaag
gagctagagttgataatcggaggtctggggaagatagacctcccagattggaagtccaac
acccgtctgaagcactgtgctgtagacagtaatgtggtccgctggttctgggaggctgta
gagagcttcactgaggagaggagaggacggttactgcagtttgttaccggttccaccaga
gttccactacagggattcaaggccctacagggttctacagggtcagcaggtccaaggctg
ttcaccatccatctgatagaggccaacacagacaacctacccaaggcacacacatgtttt
aacagaatagatatccctccctacgagtcgtacgagaaactttatgagaaactgctgacg
gccgtggaggaaacttgtggcttcgctgtggagtga
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integrated database retrieval system
