Coregonus clupeaformis (lake whitefish): 121584376
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Entry
121584376 CDS
T08357
Name
(RefSeq) PDZ and LIM domain protein 5 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121584376
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121584376
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121584376
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
121584376
NCBI-ProteinID:
XP_041756142
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Position
16:complement(7738019..7859321)
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AA seq
727 aa
AA seq
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MSSNYSVSLLGPAPWGFRLQGGKDFNMPLTISRLTDLGKAAKARIAVGDVLLSIDGITTD
GMNHLEAQNKIKACTGNLNLTLQRASTIPKPPVAPKVEPSEIIKPVAIISHRHPTEPASL
TPSAPHNKTARPFGGCRGEDRDCPIARSPHSAFIPSASSAFTPAGLTRTPPPSSPPPPFP
LSSCSSPPSLPAAPQPSVYNTPFNLYSNENACEVAMGQRRGLTESQGGAMQSNGVPRKPI
LETDIEFYHVPSHGDASKKRLMEDTEDWRPRSGTTQSRSFRILAQITGTEHQQAQENDAE
NKTSSSPVQPLTHLSPVSAVQPLLYPKPVRRGLLLNPLEFLPPGGPCPQALTHSAPTLAI
QSHSTDIGLQARTPHRSPEGTVSQSLLDALLITPITTLPPLRLRKKKRRSVSALHLPNDK
RVSWHQSVTDLGDPNLSSPVNAVYIFSEEVEEPETSSHVSSAVKTMTKGPAGSPKNSITF
TTTQGSGFPKPGLQTCFITPSFGMRGNVTTSVLPKGPAPERPAPQPHPKDEDTLVQMAEH
IPAGTRTPMCGHCNMDIRGPFLVAMGKSWHPEEFNCAHCRTSLADIGFVEEQGSVYCEHC
YEDFFAPTCSRCQLKILGEVINALKQTWHIHCFLCASCQQPIRNNTFHLEDGEPYCERDY
YSLFGTGCHGCEFPIEAGDKFLEALGFTWHDTCFVCAVCCTTLEGQAFFSKMDKPLCRKH
AHSVVKI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtaactacagtgtgtccctgcttggccctgccccatggggcttcagactgcag
gggggaaaagacttcaacatgccactcaccatctccaggctcacggacctgggaaaggca
gccaaggcacgtatcgcagtgggcgatgtgcttctttctattgatggcatcactactgat
ggaatgaaccacctggaagctcagaacaagatcaaggcctgcactggcaacctcaacctc
accctgcaaagagcctccaccatcccaaaaccccccgtggccccgaaggtcgagccatca
gagatcattaagcctgtggctattatcagccaccgccatcccactgagcccgccagtctc
acccccagcgccccacacaacaaaactgcacggcccttcgggggctgcaggggcgaggac
agggactgccccatcgcacgctcccctcattccgccttcattccctctgcatcctccgcc
ttcacccccgccggcctaacccgcacccctcctccgtcctcaccccctccacccttccct
ttgtcttcctgctcctcacccccctccctccctgccgcaccccagccctccgtctataac
acgcccttcaacctctactccaacgagaacgcctgcgaggtggccatgggccagaggcgg
ggcctaacggagagccagggcggagccatgcagtcgaacggggttcctaggaagcccatt
ctggagacagacattgagttctaccacgtgccttcccatggagacgccagcaagaagcgc
ctgatggaggacacagaggactggcgtccccgcagcggcaccacccagtcccgctccttc
cgaatcctggcccagatcaccggcaccgaacaccagcaagcccaggagaacgatgcagag
aataagacaagctcctctccagtgcagccactcacacatctttctcctgtgtctgcagta
cagccactactctacccaaagccagtgaggagagggctcctgttgaacccactggagttc
ctccctccgggaggcccctgcccacaggccctcacccatagtgcaccgaccctggctata
cagtcccattctactgatattggtttacaggccagaaccccgcacaggtcacctgagggg
acggtctctcagtccctattggatgccttgctcattacgcctatcaccacccttccgccc
ctccgcctgaggaagaagaagcgtcggagtgttagtgccctacacctgcccaacgacaag
agagtctcctggcaccagtcagtcactgatctgggtgaccccaacctctcctctcctgtc
aatgctgtctatatctttagtgaggaggtggaggagccagagaccagttctcacgtgtcg
tctgcagtcaagaccatgaccaaaggacctgctggaagccccaaaaactccatcaccttt
accaccactcagggttcaggtttccctaaacctggccttcagacatgtttcatcaccccg
tcttttggaatgagagggaacgtcaccaccagtgttctccctaagggccctgccccagag
aggccggccccccagccccatcccaaagacgaggatactctggtgcagatggccgaacac
atcccggcagggacacgcacgcccatgtgtggccactgcaacatggacatcagaggccca
ttcctggtggccatgggaaagtcctggcacccagaggagtttaactgcgcccactgccgg
acatccctggcagacattggcttcgtggaggagcagggctccgtctactgtgaacactgc
tacgaggacttctttgcacctacatgtagccgctgccagctgaagatcctgggggaagtg
atcaacgccctgaagcagacctggcacatccattgtttcctgtgtgcatcgtgccagcag
cctattaggaacaacacctttcacctggaggatggagagccctactgtgaaagagactat
tactccctgtttggtaccggttgccatggttgtgagttccccatagaggcaggggacaag
ttcttggaggctctgggattcacctggcatgacacctgttttgtgtgtgcggtctgctgc
accactctggagggtcaagccttcttctccaaaatggacaagcctctgtgcaggaaacat
gcacatagtgtggtgaaaatctga
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