KEGG   Coregonus clupeaformis (lake whitefish): 121584387
Entry
121584387         CDS       T08357                                 
Symbol
aptx
Name
(RefSeq) aprataxin
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    121584387 (aptx)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121584387 (aptx)
Enzymes [BR:cclu01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     121584387 (aptx)
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     121584387 (aptx)
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     121584387 (aptx)
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     121584387 (aptx)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     121584387 (aptx)
SSDB
Motif
Pfam: DcpS_C FHA_2 zf-C2HE HIT zf-C2H2_4 zf-C2H2 FHA zf-C2H2_6
Other DBs
NCBI-GeneID: 121584387
NCBI-ProteinID: XP_041756162
LinkDB
Position
16:19760089..19763095
AA seq 352 aa
MSICLLISKNGSHKPIHLPHLQTVVLGRGPETTIKDKKCSREQVELKADCNKRYISVKQL
GFNPTSVDTDVVGKGNQVRMRSGQQLHMVNELYPYTVCFKEDPSNSQSSTEDSVGTKRPR
GPASEEHELHRGPPGHKVPRKTEDSTQCKHGGSISTNTWPEPHTTEKTETLGYWSQGLKA
SMQDPKMQVYKDDRVVVIMDKYPKAHYHWLVLPWESIPSLKTLRREHCDLLRHMNQVADR
IVQQQCPDAGLLHFRLGYHSIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFIESQE
VIQMLEKDGRVTVKEGTNELLKLPLRCHVCGMALSTIPQLKEHLKSHPYGRL
NT seq 1059 nt   +upstreamnt  +downstreamnt
atgtctatttgtttgctcatcagcaaaaatggaagccataaaccgattcatctacctcac
ctacagacagttgtcttgggtcggggtccagaaacaacgataaaagacaaaaaatgttcc
agggagcaggttgagctcaaggcagactgcaacaaacggtatatcagtgtaaaacaactg
ggtttcaaccccactagtgtggacaccgacgtggtgggtaaaggcaaccaagtgaggatg
agatctggccagcagctgcacatggtcaatgagctgtacccgtataccgtgtgcttcaaa
gaggatccgtccaactctcagtccagcacagaggacagcgtgggcaccaagaggccccgt
gggcctgcctcagaggagcatgagcttcacagaggtccccctgggcataaagtaccaagg
aaaacagaggactccactcagtgcaaacatggagggtccatctccaccaacacatggcct
gaacctcacacaacagagaaaactgaaactttaggatattggagccaaggattgaaagcc
tcaatgcaagaccccaaaatgcaggtctacaaggacgacagagtagttgttatcatggac
aagtaccccaaggctcactatcactggctggtcctgccctgggagtccatccccagtctg
aagacactgcgcagggagcactgtgatctgttgaggcacatgaaccaggtagcggacagg
attgtacaacagcagtgccccgatgccggcctgctacacttccgcctgggctaccactcc
atccccagtatgagccatgtccacctccatgtgatcagccaggactttgactccccgtgt
ttaaagaacaagaaacactggaattcattcacaaccgactatttcatagaatctcaagaa
gtcattcagatgctggaaaaggatgggagggtcacagtaaaagaagggacaaatgagttg
ttgaaactacctctccgctgtcacgtgtgtggcatggcactgtccaccataccacaactt
aaggagcacctgaaatctcacccctatggtagattgtga

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