Coregonus clupeaformis (lake whitefish): 121584387
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Entry
121584387 CDS
T08357
Symbol
aptx
Name
(RefSeq) aprataxin
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121584387 (aptx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121584387 (aptx)
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
121584387 (aptx)
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
121584387 (aptx)
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
121584387 (aptx)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121584387 (aptx)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121584387 (aptx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
FHA_2
zf-C2HE
HIT
zf-C2H2_4
zf-C2H2
FHA
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
121584387
NCBI-ProteinID:
XP_041756162
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All DBs
Position
16:19760089..19763095
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AA seq
352 aa
AA seq
DB search
MSICLLISKNGSHKPIHLPHLQTVVLGRGPETTIKDKKCSREQVELKADCNKRYISVKQL
GFNPTSVDTDVVGKGNQVRMRSGQQLHMVNELYPYTVCFKEDPSNSQSSTEDSVGTKRPR
GPASEEHELHRGPPGHKVPRKTEDSTQCKHGGSISTNTWPEPHTTEKTETLGYWSQGLKA
SMQDPKMQVYKDDRVVVIMDKYPKAHYHWLVLPWESIPSLKTLRREHCDLLRHMNQVADR
IVQQQCPDAGLLHFRLGYHSIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTDYFIESQE
VIQMLEKDGRVTVKEGTNELLKLPLRCHVCGMALSTIPQLKEHLKSHPYGRL
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttgtttgctcatcagcaaaaatggaagccataaaccgattcatctacctcac
ctacagacagttgtcttgggtcggggtccagaaacaacgataaaagacaaaaaatgttcc
agggagcaggttgagctcaaggcagactgcaacaaacggtatatcagtgtaaaacaactg
ggtttcaaccccactagtgtggacaccgacgtggtgggtaaaggcaaccaagtgaggatg
agatctggccagcagctgcacatggtcaatgagctgtacccgtataccgtgtgcttcaaa
gaggatccgtccaactctcagtccagcacagaggacagcgtgggcaccaagaggccccgt
gggcctgcctcagaggagcatgagcttcacagaggtccccctgggcataaagtaccaagg
aaaacagaggactccactcagtgcaaacatggagggtccatctccaccaacacatggcct
gaacctcacacaacagagaaaactgaaactttaggatattggagccaaggattgaaagcc
tcaatgcaagaccccaaaatgcaggtctacaaggacgacagagtagttgttatcatggac
aagtaccccaaggctcactatcactggctggtcctgccctgggagtccatccccagtctg
aagacactgcgcagggagcactgtgatctgttgaggcacatgaaccaggtagcggacagg
attgtacaacagcagtgccccgatgccggcctgctacacttccgcctgggctaccactcc
atccccagtatgagccatgtccacctccatgtgatcagccaggactttgactccccgtgt
ttaaagaacaagaaacactggaattcattcacaaccgactatttcatagaatctcaagaa
gtcattcagatgctggaaaaggatgggagggtcacagtaaaagaagggacaaatgagttg
ttgaaactacctctccgctgtcacgtgtgtggcatggcactgtccaccataccacaactt
aaggagcacctgaaatctcacccctatggtagattgtga
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