Coregonus clupeaformis (lake whitefish): 121584392
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Entry
121584392 CDS
T08357
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121584392
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121584392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
ERCC3_RAD25_C
CUE
HHH_3
T2SSK
Motif
Other DBs
NCBI-GeneID:
121584392
NCBI-ProteinID:
XP_041756166
LinkDB
All DBs
Position
16:complement(19930924..19965020)
Genome browser
AA seq
1015 aa
AA seq
DB search
MSFFNLDRFRFDKNKATSNQDKYNGSVSPESEKENKPARVTTPIANLGKSGRGVVFEDVI
SDSDDDLASDSRRDKLTKIVKEPVKKPVTREAREMTEPSDKEDKVDKELKERLDKLQEIF
PKRNRKELLEVIESTSTLDGAVASCLMMFGDKDSMRKRKPDGSSSCQDRDGVWQPSKRRR
TSLAEDSEEEGAEPSWERQEAMVRKLQRKFPDQDKEELRAVLQEHEWNVADALEVLRMFS
DTEEDYGAPEVSSSPEVEQKEPKAKSDAKPSNGKSEAKPSRDCRESKDSIKEAKLSNASA
LKWMFMKSAPDSKPTSSSSMSQKLSNGTSVAKKEAVARKHERASSSEDEDEDEEGVSSEY
EGSDDELDSCAEDEGTSTLKGQILLFFQEASLDELSLIAGCSVKKAQKIVELRPFAVWRD
LKELFDKEKGLSAELLLGCRVVLRERAVVQGLMSKCQTISGKMVKGVTQVIDKGMGSVTQ
PSILNRKLQLKPYQLIGLKWLLLLHKHKLSGILADEMGLGKTIQAIAFLAKLYQDGIEGP
HLITVPSSTLDNWVRELKLWCPSLKVLVYYGSVEDRRYLRHDILNNQVDFNVIVSTYNLA
IGNDSDRSLFRKLKLKYAVFDEGHMLKNMNSRRYRHLMAVNAEHRLLLTGTPLQNNLLEL
MSLLNFIMPSMFSSSTTQIAKMFSMKSHEEQSRFERDRIAQAKLIMKPFILRRVKSEVLK
QLPAKEEKLVFCPMSEKQQQLYQTMVGKFKKSAIGEKRELCNVMMQLRKMANHPLLHRQY
FTTERLEAMSRLMLKEPTHFDADPVLIQEDMAVMSDFELHRLCQQYSSLHQYQLDKDLLL
DSGKFHLLQTLLATLKTKGDRVVLFSQFTMMLDIVEILLKHLGHRYVRLDGSTPIADRIV
LIDDYNTDPEIFVFLLSTRAGGLGINLTSANVVIMHDIDCNPYNDKQAEDRCHRVGQTRT
VQVIKLIHNDTIEGCMLQLGQKKLKLEQDMTAAEEGDEGTMPEDMASLLKASLGL
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttttaatttggaccggtttcgttttgacaagaacaaagcaacgtcaaaccag
gacaaatacaacggttccgtaagtccagagtcagaaaaggagaataaaccagcccgagta
acaacacctatagccaaccttggaaaatctgggcgaggagtagtgtttgaagatgtcatc
agtgactctgatgacgatttggcaagtgattcaaggagggataaattaacgaaaattgtg
aaggaacctgtaaagaaaccagtgacgcgagaggcaagggagatgactgagccatctgat
aaggaagacaaagtggacaaggagctgaaagagagactggacaaactgcaggaaatcttc
cctaaaagaaacaggaaggagctgctggaggtgattgaaagcacaagcactttggatggt
gccgtagcctcatgcctgatgatgtttggtgacaaagactcaatgaggaagaggaaaccg
gatggatccagcagttgtcaagaccgagatggggtctggcagccctcgaagaggaggaga
acctctctggctgaagactctgaggaggagggtgcagagcccagctgggaaagacaggag
gccatggttaggaaactgcagaggaagttccctgaccaggataaggaggaactcagggct
gtgctccaggaacacgagtggaacgtggcagatgccttggaggtgcttcgcatgttctct
gacacagaggaagactacggcgcacctgaagtctccagctcccctgaagtcgagcagaag
gaacccaaagccaagagcgatgccaaaccaagcaacggcaagagtgaagccaagccaagc
agagactgcagagagtccaaggacagcataaaggaagccaagctgagcaacgcttccgct
ctgaaatggatgttcatgaaatctgcccctgattctaaacctacctcttcaagttccatg
agccagaagctgtccaacgggaccagcgtggctaaaaaggaggcagtggcgaggaagcat
gagagggccagcagctcggaggacgaggacgaggacgaggagggggtcagcagcgagtat
gagggctcggacgacgagctggactcttgtgcggaggacgagggcacatccacgctcaaa
ggccagatcctgctcttcttccaggaggcctcgctggacgagctgtccctcatcgccggc
tgttcggtgaagaaggcccagaagatcgtggagctgcggccctttgctgtttggcgcgac
ctgaaggagctgttcgacaaggagaaaggcctgtctgcagaactgctcttgggctgcagg
gtggtgctcagggagagggctgtggtccagggcctcatgtccaagtgccagaccatctcg
ggcaagatggtgaagggagtcacccaggtcatcgacaagggcatgggctccgtgacccag
ccctccatcctcaacagaaagttacaattgaaaccctaccagctgattgggctgaagtgg
cttctcctgctgcacaaacacaagctgagtggaatcctggctgatgagatgggtttggga
aagaccatccaggccatagccttcctggccaaactgtaccaggatggcatcgaaggcccc
cacctcatcactgtgccctcctccaccctggataactgggttcgggagctaaagctgtgg
tgccctagtctcaaggtgttagtctattacggctctgtggaggaccggcggtatctgcga
catgacatccttaataatcaggtggacttcaacgtcatcgtgtccacatacaacttggcc
atcggcaacgacagcgaccgcagtctcttccgcaagctcaaactgaagtacgccgtgttt
gacgagggccacatgctgaagaacatgaactcccgccgctaccgccacctcatggccgtc
aacgctgagcaccggttgctactgaccggcacccctctgcagaacaacctgctggagctg
atgtcgctgctaaacttcatcatgccctccatgttctccagcagcaccacacagatagcc
aagatgttctccatgaaatcccatgaggagcagagtcgtttcgagagggaccgcatcgcc
caggctaaactcatcatgaaacctttcatcctcagacgagttaagagtgaagttcttaag
cagctgccagcgaaggaggagaagttggtattctgcccaatgagtgagaagcaacagcag
ctttaccagaccatggtgggcaagttcaagaagtctgccatcggagagaagagagagctg
tgcaacgtgatgatgcagttgaggaagatggccaaccaccctctgctccacagacagtac
ttcaccacagagagactggaggccatgagtcgcctcatgcttaaggaaccgacccatttt
gatgcggacccggtgctgatccaagaggacatggcggtgatgtcagactttgagcttcac
cggctgtgccagcagtactcgtccctgcaccaataccagctggacaaagaccttctgctg
gactccggaaagttccacctgctccagacgctactggccacgctcaagaccaagggagac
cgagtagtgctctttagtcagttcaccatgatgctggacatcgtagagattctgctcaaa
cacctgggccaccgctacgtcagactggacggctccacgcccattgcagacaggatcgtg
ctgattgacgactacaacacggacccagaaatctttgtgttcctgctgtcgacgcgggcc
ggcggcctgggcatcaacctgacctctgccaacgtggtcatcatgcatgacatcgactgc
aacccctacaacgacaaacaggctgaggaccgctgccacagagtagggcagactaggaca
gtccaggtgatcaagctgatccataacgacacaatagagggctgcatgctgcagctgggt
cagaagaaactcaaactggagcaggacatgaccgctgccgaggagggtgacgagggcacc
atgcctgaggacatggcctccctgctcaaggcatcgctgggcctgtga
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