Coregonus clupeaformis (lake whitefish): 121584410 Help Entry 121584410         CDS       T08357                                  Name (RefSeq) dmX-like protein 1 isoform X1   KO K24155   rabconnectin-3a Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04142   Lysosome Brite KEGG Orthology (KO) [BR:cclu00001]  09140 Cellular Processes   09141 Transport and catabolism    04142 Lysosome     121584410  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cclu04131]     121584410 Membrane trafficking [BR:cclu04131]  Exocytosis   Small GTPases and associated proteins    Rab associated proteins     121584410  Endosome - Lysosome transport   Acidification regulators    Rabconnectin-3 complex     121584410    RAVE complex     121584410 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Rav1p_C Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WDR55 Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd EIF3I WD40_MABP1-WDR62_2nd WD40_Gbeta Beta-prop_EML Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 Beta-prop_IP5PC_F Beta-prop_Vps41 Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_DCAF12 PBP1_TM Beta-prop_SPT8 Motif Other DBs NCBI-GeneID:  121584410 NCBI-ProteinID:  XP_041756193 LinkDB All DBs Position 16:10410944..10472170 Genome browser AA seq 3021 aa AA seqDB search MNLHQVLTGAVNPGDNCFSVGSINNQPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV GCVDSSLQGGQVAASYGSIICVFEPVQLMNQKDRTSAKLSYQWQKSGQFVLQSIVRNLAW DPTGTRLLTGSASLQLWSNISDGLEEEGEQADMTIGDPPCPWRCIWHCKTASPIQLMKFS PDGEFFATAGQDDCLVKVWYSTSKWQSGVTKLFTPPEHSAHGELDFSFIYLAHPRSVTSF SWRKTSKYMPRGSVCNVLLTCCKDSVCRLWAETLLPSDSLLSGHTLCHVKNGQNSDSLKS SGGSKKTPSHIKTQDRNPLELNLQESWRAPLRGVAQPSLTSRLPNQQNGHHNHQTNSVPH ANALCHFHIAASINPATDIPLLPSITSLCGGDDEEPGGPFTVHWLNNKELLLTLAMEVFL QQLRGSVEQNHSEHSHEEPDYEEVEQAASRAADGEPDVASTQLPAAAVEHQVEVLLEDWN RGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLSRSVV MYACNKNVDLAIQHGRQRPAGLPHSSSVLIPYGQSKATTSSSLRLSIFTPNVLMISTHSD GSLNQWAVSFAEESAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHHNALRTPD VDSVLAPLATLSQPLGGGPSRVSLGAVSQDPNAIYSELILWRVDPVGPLSFSGGVSELAR INSLHSSAFSNVAWLPTLIPSNCLGVYCNSPSACFVASDGHSLRLYQAVIEAKKLLSELS NPDISKYVGKVFNIISQQSTAKPGCIIELDAITDFQGKETQLLHVFEEDLIFGSERSTQE APATDTASSQPSFSARFFLVVVEFTQTGRSFLHMWHLQLAAGPITMDETDAPPDKEYVTS SPMNSSFNFETFSSPSAQKNKSCTSNLQSASRLTLATQRLYSQELALPDGVEVISVTPSA GHLSASSLQPAGGAPYLLATSCSDGKVRFWRCRAAAVEPDAQELTYTWEEWPLLVEEGLG NSSAVTVSGRPVTVSCCHTSRIAVAYRHNPSPHLSPNPNHLRPNPQQGVREPLVHVGVFQ CESTGGSHWVLEQTLILDASTPTGNNNNNMESGTKSLNVENNNLDIYLPNDHCLGTSGKS LVHLDWVSREDGSHILTVGIGSKLYMYGLLSGKPPELGLSDGPREQSSSRLVLLRSVDLV SSVEGSLPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPAKSTASNTTTTDMGSVSSLLAA MKQNHEDGLNPAPPKKSLTRSMTSLAQKLSGKRTAYDLPAEMEDCGLFEAAHHLFPTLPQ YHPVQLLELMDLGKVRRAKAILSHLVKCIAGEIVALKDNATNQDKRLRSRTISAGGSTSR DPKRFSKGESSDYTEIDSIPPLPLYALLAADEDFSPKPKDKVASLSGDSGHGSSQTDAYD ELFHSSGVGVDDLEHMDSDQEDGGAKVIDLSQYSPTFFGPEHAQVLSSHLLHSSLPGLTR MEQMSLMALADTIATTSTDIRESQSRSKGGETLDECGLKFLLAVRLHTFLLTTLPPAHRA QLLRQGLSTCHYAWAFHSEAEDELLNMLPALQKEDPTWPELRAMGMAWWLRSTNKLRRCI EKVAKASFQRQNDPLDAAIFYLAMKKKAVVWGLYRSQKNAKMTAFFSNNFGEERWRRAAL KNAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLYESEFETSSTYK RILQRHVLGQDSQLPAHRDPFLRSTAHWVLEDYSRALDTLLEQPTAPNLASSTQAGHTTQ PGTSSMSLCSPEVFNFYTYLRTHPLLLRRHFGSSEKTRVGLTAEGHMAHSISLVERRLFF TAAYAHLQAGCPMLALEVLSKMPKVLKRSKLHQDELTNPDLSEMKKEQASDLDWSQPTLN GFESVSDSLSNSQSDSVLSFDWGQPSVSVQDETLELKWESDKEDEEDEPQGLAMKNISAD NTSSVFQGDISPLTETPLDEADVLMPSEDILAAQLKFSACLKILTTELRTLSTGYELDGG KLRYQLCQWLEREVVSLQRCCSYKPCLPELALGMAGPGGEEEAQARPGEAQRTRRHWLQS NQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESQQDDSVQSAVTPYLHHASIPLLLA CTASAKTVVANPIVHLTNLTHDILHTINALDSPPHPDVINNEIYVMHTLAASLSACIYQC LCDGHNHSHVNQFTGIVYQSILSFQHHPVRTVSTEETVLPNTHPAQWPGISALIRLLNSA GEESQPGLAVLLCEILTAVFLSLFVHGLATHSSNELFRIVAHPLNSKLWVAVFGGGTRTP ITEKPSPAKSPPAGSEELDRKPRRFKLLSSSRSASREGPESPGPTSPVVEQETSIFKEHF VPPELSIWDYFIAKPFLPPSESRVEYDSEESQGSQDEDDDDEEDEYGDFDPNSPSREHSN PNSYSWCLMRLAMVQLVLGNLKSFYPMAGHDLLDLPVGSPLCHAVLKTLQRWEQVLLKRL EIFGGPPSKYISTHPLDETAASGPAILRHKALFEPSNTPFRSSHYSALPVKRLWQYLVKQ EEVQETFIRNIFTKKRDQSESVEDHNENDKCSGMEEPSCNQSEADLGYPGGKARIIHKDS DIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDTEAEAKGDDFLVIQAR DDFNTLHGTTPYTHSSPGTPINMPWLGGLQTGRGAAVLIKRNINNVRRMTSHPTLPYYLT GAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGMVDADGALRLWQTNTTGN TPKPYLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVNPMNSLVHAFSCHE SGATVLSLAPRKQLLITGGRKGWISVLELAHRHQRQSFQAHDSPVKALVVDPTEGSFISG SAEGNIKVWSLSTQCLLHHFPNEHARQSLFRNLGTGVMQIEVGPANHIFSCGADGTMKMR ILPDRFSVNNGNLKNDVKFII NT seq 9066 nt NT seq  +upstreamnt  +downstreamnt atgaatcttcaccaagtccttactggggctgtcaacccaggggacaattgtttttctgta ggtagcataaacaaccaaccattcacggcatatgcctcgggctgtgacgttgtgattttg ggcagtgactttgaaaggctacagatcatcccaggagcgaagcatgggaacatccaggtg ggctgtgtggacagctcactacagggaggccaggttgcagcttcctatggaagtatcatc tgtgtctttgagcctgttcagctcatgaaccagaaggacaggacatcagcaaaactgagc taccagtggcagaaaagtggacagtttgttttgcagtccatagtgcgcaacctggcctgg gaccccacaggcactcgtctcttaactgggtccgcaagcctccagctgtggtctaatatc agcgatggtttggaggaggaaggggaacaggcagacatgaccattggtgaccctccgtgt ccctggaggtgtatctggcactgcaaaaccgcctccccaattcagctcatgaagttctct ccagatggagaattcttcgctactgccggacaggacgactgtctggtcaaagtgtggtac agcaccagtaaatggcagtctggtgtgaccaagctgttcaccccaccggagcacagcgct cacggggagctggacttctcttttatctacctggcacacccacgctctgtaacgagcttc tcctggaggaagaccagcaagtatatgccacggggttcagtgtgtaatgtgctactgacc tgctgtaaggacagtgtgtgtcgcctgtgggcagagaccctgcttcccagtgacagcttg ctgtccggacacacgctctgtcacgttaagaacggacagaacagcgactcgctcaaatcg tcaggcggcagcaagaagactccctctcatatcaaaacgcaggacaggaatcccctggag ttgaatctgcaggagtcgtggagagcccccttgagaggtgtggcccagccctccctgacc agccgcctcccgaaccagcagaacggtcaccacaaccaccagaccaacagcgtgccccat gccaacgctctctgccacttccacatcgctgccagcatcaaccctgccacagatatcccc ctgctgccgtctatcacgtcgctgtgtgggggagatgacgaggagcctggcgggcccttc accgtgcactggctcaacaacaaggagctgcttctcaccctggccatggaggtgttcctg cagcagctcagaggcagcgtggagcagaaccactccgaacactcccatgaggagcctgac tatgaggaggtagagcaggctgctagtcgagcggcagatggagaacctgacgtggcgtcc acccagctgcctgctgcagcggtggagcaccaggtagaggtgttgctggaggactggaac aggggggcagacatgctgttcagtatccaccccatggatggctctctgctggtgtggcac gtggactggctggatgaataccagcccggcatgttccgccaggtccaggtgtcctttgtg tcccggatccctgtggccttccccacgggcgatgccaactccctgagccgcagcgtggtc atgtacgcctgcaacaagaacgtggacctggccatccaacatggccgccagcggcctgcc ggcctgccacattcctcgtcggtgctgatcccctacggccagagcaaggcgaccacctcc agcagcctgcgcctcagcatcttcacccccaacgtgcttatgatctccacgcactccgac ggctccctcaaccagtgggcggtcagcttcgctgaggagtcggctttctccaccgtgctc agcgtgtcccacaagtcacgctactgcggccaccgcttccacctcaacgacctggcctgc cactccctgctgcccctgttgctcaccacctcacaccacaacgccctgcggacccccgac gtggacagtgtcctggcccccttggccaccctttctcaaccccttgggggcgggcccagc cgggtgtccctgggcgcggtgtcgcaggaccccaacgccatctacagcgagctcatcctg tggagggtggatccagtggggccgctgtccttctctggaggggtgtctgagctggccagg atcaactctctccactcctctgccttctccaacgtagcctggctgcccacactcatcccc agcaactgccttggtgtctactgcaactctcccagtgcctgcttcgtggccagtgacggt cactcgctgaggctctaccaggctgttattgaagccaagaaactactcagtgagctctcc aacccagatatttcaaaatatgtcggcaaagtttttaacatcatcagccagcaatcaact gctaaaccaggttgtatcatcgagctagatgccattactgactttcaggggaaggagact cagctgctgcatgtgtttgaggaggatctgatttttggcagtgagcggagcactcaggaa gcccccgctacagacactgcctccagccagccaagcttctccgcccgcttcttcctggtg gtggtagaatttacccagactggcaggtctttcctgcatatgtggcacctgcaactggca gctggcccaatcactatggacgagaccgacgctccgcctgacaaggagtatgtgacctcg tcgccaatgaacagctcttttaactttgagacgttcagctccccctcggcccagaagaac aagtcttgcacgtccaacctgcagagtgccagtcgcctcaccctggccactcaaaggctg tacagccaggagctagctcttccagacggcgtggaggtgatcagtgtcacgccctcagca ggtcatctgagcgcgtcctccctgcagccggcgggtggcgctccctatctcctggccact tcctgttcagacggaaaggtgaggttctggaggtgcagggcggctgcagtggagccagac gcccaggagctgacgtacacctgggaggaatggcctctattggtggaggaggggctgggc aacagcagtgccgtgaccgtgtcgggcagaccagtgacagtcagctgttgtcacaccagc cgcatcgcagtggcctaccgacacaaccctagccctcacctgagccctaaccctaaccac ctgaggcctaaccctcagcagggtgtcagagaaccactggtccacgtaggggtattccag tgcgagtccacaggcggctcccactgggtgctagagcagaccctcatcttggatgcctcc actcccactggtaacaacaacaataacatggagagtggcaccaagagcctgaatgtggag aataataacctggacatctatctgcccaatgaccactgcctggggacctctggaaagagt ctggtccacctggactgggtctccagggaggacggctcccacattctcactgtggggatt ggttccaaactctacatgtacggcctgctctctggaaaacctcctgaactcggcctgtct gatggccccagggagcagagctcttcccgcctggtcctcctgcgctccgtggacctggtc tcctccgtggagggctccctgcccatccctgtctccctgtcctgggtgagggatggcatc ctggtggtgggcatggactgtgagatgcacgtgtactcccagtggcagcccccggccaag tccacagcctcgaacaccaccaccacagacatgggcagcgtttcgtccctcctggctgca atgaaacagaaccacgaggatggcctgaaccctgctcctcccaagaagagcctgaccagg tccatgaccagcctggcccagaagctgagtgggaagagaacagcgtacgacctgcctgca gagatggaggactgcgggctgtttgaggcggcacaccacctgttccccacactgccccag taccacccggtacagctgctggagctcatggacctggggaaggtccggcgggccaaggcc atcctctcccacctcgtcaaatgcatcgccggggagatcgtggccctcaaagacaacgcc accaaccaagacaagcgtctccgctcgcgcaccatcagcgccggcggcagcacctccagg gaccccaagcgcttcagcaagggcgagagctcggactacacagagattgactccatccct cccctgccactgtacgcgctgctggcggccgacgaggacttctcccccaagcccaaggac aaggtggccagcttgagtggagacagtggccacgggtccagtcagacggacgcctacgat gagctcttccacagcagcggggtgggcgtggacgacctggagcacatggacagcgaccag gaggatggcggtgctaaggtcatagacctgtctcaatacagccccaccttctttgggccc gagcacgcccaggtcctgtccagccacctgctgcattccagccttccgggcctgacccgc atggagcagatgtccctcatggccctggctgacaccatcgccaccaccagcactgacatc cgggagagccagagcaggagcaaaggtggagagactttggatgagtgcggtctgaagttc ctattggctgtgaggctccatacgttcctgctgaccaccctgccccctgcccatcgcgcc cagctgcttcgccaaggtctgtccacctgtcactacgcctgggccttccactccgaggcc gaggacgagctgctcaacatgctacctgccctgcagaaggaagaccccacctggcccgag ctccgagccatgggcatggcctggtggctcaggagcaccaataaactccggaggtgtatt gaaaaagtcgcaaaagcgtcttttcaaaggcagaacgatcctctggacgctgccatcttc tatctcgctatgaaaaagaaagcggtggtctggggactgtacaggtctcagaagaatgcc aaaatgacagcgttcttcagcaacaacttcggtgaggaaaggtggaggagggctgccttg aagaacgccttctctctgctggggaagcagcgcttccagcactctgcagccttcttccta ctggcaggctccctcaaggacgctgtggaggtttgcctggagaagatgcaggacctgcag ctggccctggtgatctcccggctctatgagtccgagtttgagacttcctccacctacaag cgcatcctgcagaggcacgtgctgggccaagacagccagctccctgcccaccgggacccc ttcctgcgcagcacagcccactgggtactggaggactacagccgggccctggataccctg ctggagcagcctactgccccaaacctagcgtcctccactcaggctggccacacaactcaa ccaggtacctcgtccatgtccctctgtagcccggaggtcttcaacttctacacctacctc cgcacacatcccttactgctgcgccgccacttcggctcgtctgagaagaccagggtgggt ctgacggcggagggccacatggcacactccatcagcctggtggagaggaggctgttcttc accgcagcctacgctcacctgcaggccggctgccccatgctggccctggaggtcctctcc aaaatgcccaaagtcctcaaaagatccaagctccaccaggacgaactcaccaaccccgac ctgagcgagatgaaaaaggaacaggcgtcagatttggactggtctcagcccacgttgaat ggcttcgagtcggtgtcagacagcttgtccaatagccaatcggactctgtgctgagtttt gactggggccagccctctgtgtcggttcaggatgaaaccctggagttgaaatgggaaagc gacaaggaggatgaggaggacgaaccacagggcttggccatgaagaacatcagcgccgac aacaccagtagtgtcttccagggcgacatctctccgttgacggagacgccgctggacgag gccgacgtcctcatgccctctgaggacatccttgccgctcaactcaagttcagcgcctgc ctgaagatcctgaccacggagctgcggaccctgtccacgggttacgagctggacgggggg aagctgcgctaccagctctgccagtggctggagagggaggtggtgtccctgcagaggtgc tgcagctacaagccctgcctgccagagttggccctgggaatggcagggccggggggagag gaggaggcccaggcccggcctggtgaggcccagcgcacccgcagacactggctccagagc aaccagcctctcctgcgcatgttcctcagctactgcagcctgcacggctcccatggagga ggcctggcctcggtgcgcatggaactcatcctgctgctgcaggagtcccaacaggatgac agtgtccagtcggctgtcaccccatacctgcatcacgcctccatccctctcctgctggcc tgcactgccagcgccaagacagtggtggccaaccccatcgtccatctgaccaacctcacc cacgacatcctgcacaccatcaacgcgcttgactccccgccacacccagacgtcatcaac aacgagatctatgtgatgcacacgctggcagcctcgctgtccgcctgcatataccagtgt ctctgcgacggccacaaccacagccatgtgaaccaattcactgggatagtgtaccagagt atcctctccttccagcaccacccggtacgcaccgtgagcacggaggagactgtactgccc aacacccacccagcacagtggccaggtatcagtgccctgatccgcctgttgaactctgct ggtgaggagagccagccaggcctggccgtgttactgtgtgagatcctgacggccgtcttc ctcagcctgtttgtgcacggcctggccacccactccagcaacgagctgttccgcatcgtg gcccacccgctcaacagcaagctgtgggtagccgtgttcggaggggggacacgtaccccc atcacagagaagcccagtccggccaagtcacctccagcaggcagtgaggagttagacagg aagcccaggcgcttcaagctgctgtcgtcgtcacgcagtgcctccagagaggggccagag agccccggcccaaccagccccgtggtggagcaagagacctccatcttcaaagagcacttt gtccccccggagctcagcatctgggactacttcatcgcaaagcctttcctccctccgtca gagagcagggtggagtacgactcggaggagagccagggcagtcaggacgaggatgatgat gatgaagaagacgagtatggagactttgaccccaactctccaagccgagaacattccaac cccaactcctacagttggtgtttgatgcgcctggccatggtccagctggtcctgggcaat ctgaagtccttctaccccatggcaggccacgacctactagatctacctgtgggctctcct ctgtgtcacgcggtgctgaagaccctccagcgctgggagcaggtgttgctgaagaggctg gagatcttcggggggccgccctccaagtacatctccacacaccctctggacgagacggct gcctcgggccccgccatcctcagacacaaagccctgtttgagccatccaacacacctttc aggtccagtcactactctgccctgcctgtgaagaggctgtggcagtacctggtcaaacag gaggaggtgcaggaaacgttcatccgcaatattttcaccaagaaacgagaccaaagcgag tcggttgaggaccacaatgaaaatgacaaatgttcagggatggaggagcctagctgtaac cagagcgaggcagatctgggctaccccggaggcaaggcccgaatcatccacaaggactcg gacatcattaccgccttcgccatcaacaaggctaatcgtaactgcttagtcatggcctcc actcatgacattcaggagctggacgtgtcctccatcttggccactcagattctgacgtgg atcgacgacgataccgaggcagaggccaaaggtgatgacttcctggtgatccaggcccgg gacgacttcaacaccctccacggcaccaccccctacacccacagcagcccagggacaccg atcaacatgccctggctcgggggcctgcagacgggcagaggcgctgccgtgctcatcaaa aggaacatcaacaacgtgagaaggatgacctcacacccaaccttgccttactacttaaca ggagcgcaggacggaagtgtccggatgtttgagtggggccactctcagcagatcatctgc ttccgaagtccaggcaattccagagtcacacggatacgattcaaccaccaaggaaacaag tttggtatggttgacgctgatggagctctacgtctgtggcagaccaatacgactgggaac acccctaaaccctacctgacattgcagtgccataataagacggctcacgactttgtgttc gtgggctcatcctccctcatagccacagcagggctgtcaacagacaacaggaatgtgtgt ctttgggatacattggtgaatccaatgaacagcctagtgcacgcctttagttgtcatgag tcgggggccacagtgctttcgctggcccccaggaagcagctgctgatcacaggtggcagg aagggctggatcagcgtgctggagctcgcccacaggcaccagcgccagagcttccaggcc cacgactcccccgtcaaggccctggtcgtggaccccaccgagggcagcttcatcagcggc tccgctgagggcaacatcaaggtgtggagcctgtccacgcagtgcttactgcatcatttc cccaacgagcacgctcgccagtccttgttccggaatctgggcacgggcgtgatgcagatc gaggtgggcccggccaaccacatcttctcgtgcggcgccgacggtaccatgaaaatgagg atcctccccgaccgcttcagcgtcaacaatggcaacctgaagaacgacgtcaagttcata atttag

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