Coregonus clupeaformis (lake whitefish): 121584461
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Entry
121584461 CDS
T08357
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03440
Homologous recombination
cclu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121584461 (top3b)
03460 Fanconi anemia pathway
121584461 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cclu03032
]
121584461 (top3b)
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121584461 (top3b)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
121584461 (top3b)
DNA replication proteins [BR:
cclu03032
]
Eukaryotic type
DNA Topoisomerases
121584461 (top3b)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
121584461 (top3b)
FA (Fanconi anemia) pathway
121584461 (top3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
EBNA2_Core
Motif
Other DBs
NCBI-GeneID:
121584461
NCBI-ProteinID:
XP_041756280
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All DBs
Position
16:complement(21125432..21188095)
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AA seq
857 aa
AA seq
DB search
MKTVLMVAEKPSLAQSIAKILSKGSCSSRKGLNGACSVHEYMGTFSGQSVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFTKAPTEKKEANPKLNMVKFLQVEAKGCDYVVLWLDCDK
EGENICFEVLDAIEPVMNRPYGSEQTVYRAKFSSITDTDIWAAMTKLGEPNRNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVIQAKVFKGKESPLTLDWDRVRVFDREVGQMFVNMTKTSREAKVESVSKKEKAKQRPLA
LNTVEMLRVASSSLGMGPQHTMQIAERLYTQGYISYPRTETNHYHENFDLKGTLRQQANN
PFWAQEVKALLSEGLNRPRKGADAGDHPPITPMRAASEGELGSDGWRLYEYIVRHFIATV
SQDCKYLQTTISFIIASEGFSCSGKTLISPGFTEVMPWLGIPLEEAMPVCERGDVFTVEE
IKLVERQTSPPDYLTEADLITLMEKHGIGTDASIPVHINNISQRNYVTVENGRKLKPTNL
GIVLVHGYYKTDAELVLPTIRGAVEKQLNLIAQGKVNYQQVLQHTLDIFKRKFHYFFDTI
ASMDELMEVTFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCAGCDETYSLPQNGAIKL
YKELRCPLDEFELVLWTSGSRGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNS
LGIGQCVECEGGVLVLDPTSGPKWKMSCNRCNVMVHFFEHAHRVQVAQESCEACEASLVA
VDFNKTRSPLPDGETQHSGCVFCDPVFQDLVELKHATMRHPSMTRGGGARRGGRGRGRGR
REKKPKDKMAALAAYFV
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagttttgatggtagcggagaagccgtcgttagctcagtcaattgccaaaatc
ctatctaaaggcagctgctccagtcgcaaaggtctcaacggagcatgttcggtccacgag
tacatgggcaccttctcaggccagagcgtgcgctttaagatgacgtcagtgtgtgggcat
gtcatgagtctggatttcatagggaagtataataactgggacaaggtggacccagctgaa
ctcttcactaaagcccctacggagaagaaggaggccaaccccaaactcaacatggtcaag
ttcctacaggtcgaagccaagggatgtgactacgtggttttgtggttggactgcgacaaa
gagggagagaacatctgctttgaggtcctggatgccattgagccggtaatgaaccgtcca
tacggcagcgagcagaccgtctaccgagccaagttcagctccatcaccgacacggacatc
tgggcggccatgaccaagctgggagagcccaaccgtaacgaggctctgtccgtagacgct
cggcaggagctggacctgcgcattggctgtgccttcacccggttccagaccaagtacttc
cagggtaaatatgggaacctggactcgtccctgatctcctttgggccatgtcagaccccc
acactgggcttctgtgtggagcgccacgacaagatccagtccttcaaaccagagacctac
tgggtcatacaggctaaggttttcaaagggaaagagtctcctctgactctggactgggac
agggtgagggtcttcgacagagaggtgggacagatgtttgtcaacatgactaaaacctcc
agggaggccaaggtggagtcggtgagtaagaaggagaaggccaagcagagacctctggcc
ttgaacaccgtggagatgctccgagtggccagctcctctctaggtatgggtccgcagcac
accatgcagatagcagagcgtctgtacacccagggctatatcagctacccccgtactgag
accaaccactaccacgagaactttgacctgaaggggacactcagacagcaggctaacaac
cccttctgggctcaggaggtgaaggctctgctgtcagagggactgaaccgtcccaggaaa
ggagctgatgctggagaccaccctcccatcacccccatgagggctgcctccgaaggagag
ctaggaagtgacgggtggcgtttgtacgagtacattgtgcgtcacttcatcgccacggtg
agtcaggactgtaagtacctgcagacaaccatctccttcatcatcgcctcagagggtttc
tcctgcagcggaaagacactcatatcacctggcttcacggaggtgatgccatggctgggt
atccctctagaggaggctatgccagtgtgtgagaggggagacgtcttcacagtagaggag
attaaactagtggagagacagaccagccctccagactacctcactgaggccgacctcatc
acactgatggagaaacacggcattggtactgacgccagcatcccggtccatatcaacaac
atctctcagaggaattatgtgacggtggagaacggacgcaagctcaaacccaccaacctg
ggcatcgtcctggtgcacggatattacaagacagatgctgagctggtgctgcctaccatc
cgtggcgctgtagagaaacagctgaacctgattgcccagggcaaggtgaactaccaacag
gttctgcaacacaccctggacatcttcaagaggaagttccactacttctttgacaccatt
gctagtatggacgagctcatggaggtgacgttctctcccatcgctgccaccggcaagccc
ctgtcccgctgcggcaagtgccatcgcttcatgaagtatattcaggccaagcctagccgg
ctgcactgtgctgggtgtgatgagacgtacagcctgcctcagaacggagccatcaagctg
tacaaggagctgcgctgcccgctggatgagtttgagctggtgctgtggacctctggatcc
aggggaaagagctaccctctatgtccctactgcttcagcaacccccccttcagggacatg
aagaaaggtatgggatgtaatgagtgcacccacccgtcctgccagcacagtctcaactcc
ctgggtattggtcagtgtgtggagtgtgagggcggggtgctggttttggaccctacctcc
ggccccaagtggaagatgtcctgcaacaggtgcaacgtgatggtccacttctttgagcac
gcacacagagtgcaggtagcccaggagagctgtgaggcgtgcgaagcgtccctggtagcg
gtggacttcaacaagacgcgctccccgctccctgacggagagactcagcacagcggctgt
gtgttctgcgacccagtcttccaggacctggtggaactcaaacacgccaccatgagacac
ccttccatgacccgtggcgggggtgcacggcgaggggggcggggcaggggcagggggcgc
agagaaaagaaacccaaagataagatggctgccttggcagcgtacttcgtgtag
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