Coregonus clupeaformis (lake whitefish): 121584493
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Entry
121584493 CDS
T08357
Name
(RefSeq) retinoic acid receptor RXR-alpha-B isoform X1
KO
K08524
retinoid X receptor alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04148
Efferocytosis
cclu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121584493
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
121584493
03320 PPAR signaling pathway
121584493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121584493
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121584493
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
121584493
Nuclear receptors [BR:
cclu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
121584493
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
121584493
NCBI-ProteinID:
XP_041756324
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Position
16:complement(15482230..15526852)
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AA seq
494 aa
AA seq
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MDTKPFLSFGFLKSQCSVAPPPQRWHPGEAGSLPTACSCFTGICLLHQHRRPIDPSGQLS
SPSLRSHHVHRGMGAHPLHPSLLIPSSVSYSGPPHSVSSRPAGHHSTSSNMGFSPQLSFP
VISSNSSISSTEDIKPPLGHNRVLKVPAQPTGTCLSLNKHICAICGDRASGKHYGVYSCE
GCKGFFKRTVRKELTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAIGMKREAVQEERQRAK
ERSESEADSLGCANEDMPVERIEEAELAVEPKTNTYIEGSLGLPTNSPNDPVTNICQATD
KQLFSLVEWAKMIPHFSELALNDQVILLRAGWNELLIASFSHRSITVNDSILLATGLHVH
RNSAHSAGVGAIFDRVLTELVCKMRDMQMDRSELGCLRAIILFNPDSKGLSNPGEVEALR
EGVYASLEAYCKHKYPDQPGRFAKLLLRLPALRSIGLKFLEHLFFFKLIGDTPVDTFLME
MLEAPHQMTKQHCS
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggataccaaacctttcctttcttttggcttcctcaagagccagtgctcggtggccccg
cctcctcagcgatggcacccgggggaggcgggcagcttgcccacagcatgctcgtgcttc
acaggcatttgcctgcttcaccagcacaggagacccatagacccctccggtcagctgtcc
tcaccatcgctccgctcacaccacgtccataggggaatgggtgctcaccccctgcaccca
tctctgctcatcccgtcctcggtgagctactcaggccctccacactccgtcagcagccgc
ccagcgggacaccactctacctcctccaacatgggtttcagcccacagctcagcttccca
gtgatctccagtaacagcagcattagcagcacagaggacatcaaacccccactgggccat
aacagagtgctaaaggttcctgctcagcccacaggcacctgtctctcccttaacaaacac
atctgtgccatctgtggagaccgcgcctcaggtaaacactatggagtatatagctgtgaa
ggttgcaagggcttcttcaagagaacagtgaggaaggagctgacgtatacctgtcgagac
aacaaggactgtctgattgacaagcgccagcgcaaccgctgccagtactgccgataccag
aagtgtctggccattggcatgaagagagaagctgtgcaggaggagcgccagcgagccaag
gagaggagcgagagcgaggcggactcgttaggttgtgctaacgaggacatgcctgtggag
aggattgaggaggcggagctcgctgtggagccaaagaccaacacatacattgaggggagc
ctgggcctgcccaccaactcacccaacgaccctgtgaccaatatatgccaggcaacagac
aagcagctcttttccttggtggagtgggccaagatgatcccccacttctcagagctggcc
ctgaatgaccaggtcatcctcctaagagcagggtggaatgagctcctcatagcctctttc
tcccatcgctccatcactgtgaacgacagcattctgctggccaccggcctccacgtgcat
cggaacagcgcccacagtgcaggagtgggggccatctttgacagagtgctgactgagctg
gtgtgtaaaatgcgagacatgcagatggacaggtctgagttagggtgccttcgagccatc
attctcttcaacccagactccaaaggcttgtcaaacccaggggaggttgaggcactcaga
gaaggggtgtatgcttcactggaggcatactgtaaacacaaataccccgaccaaccagga
agatttgccaaactgttacttcgattgccagccctacgttccattggcctcaagtttctg
gagcacctgttcttcttcaaactgataggggatacacccgttgacacattcctcatggaa
atgttggaagctccacaccaaatgacaaaacagcactgcagttaa
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