Coregonus clupeaformis (lake whitefish): 121584548
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Entry
121584548 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121584548
Membrane trafficking [BR:
cclu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
121584548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
ATG2_CAD
VPS13_C
Motif
Other DBs
NCBI-GeneID:
121584548
NCBI-ProteinID:
XP_041756429
LinkDB
All DBs
Position
16:complement(17825117..17884793)
Genome browser
AA seq
3161 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALRQLDIPFKVRAG
HIGRLELKIPWKNLYNQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAKQENPALEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDVTNPNRPLSFGMSLQ
NLSLQTADENWKPCLLNEKAKLFFKLVQLNNLFAYWNVNATLYSNHMPDEALRCLQNSMD
IYSSTPMKHDFIFCPITANAKLCMNPRSDVNFSSPKVDLVVNLREVAVELNRPQYVSILE
LLGSVDMMSRNLPYRKYRPQVHVHTNAYIWWQYVITGIMEVDVKPRLHMWSWQCVRCHRQ
TVKRYRALYKSKITNKKPTEKLLRELEETERTLDIFNITLARQQAEMEANKAGLRIFRPG
VEEEESQGWLGWMWSGWSGDGGTKAKEVKTGAFGEFMTSAEKAKLYTAIGYSEIAVNHNL
PKNFEDIKINFHMKSMSFSVKDNKDQNEILKLTVENLKSMLTQRPGAKAIKLSAQLSLFE
VTGLANNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLRVESQPLEIIYDAVT
VNSMSAFFLPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYVI
VPQTGFYDSTQNLMLLDLGHFKVSSLSRKGLPQLSVGSSTIQDIMSQAYDSFDIKLSSLQ
FLYSKPDGNWRKARKLKQSALHILEPVDVKVVFSRAMVVTDSRMPKFKIFGEMPLLSLRI
SDDKVRAVLELIDSIPLPASRPAPRSTNIHSTPKAPKQSYTAQLTPRQPTMAELRNSLIW
ESGSEEDLFYDAPSSPIDDHPFFPDNMPSPMQRSDSVKRRGLVKKDPKKNMTDFLMTFEI
NKLSVQLCRLSGGQEVTVLHLGTERLGSELKLRTFDMTSNTFLREICLECSEYMDSEEKK
VHLITTLDNTEEDLLTLEYTKADKNGPEFKSQYKNTEQSVKVNFSSLDIHLHTEALLNAM
NFLNGLLPPTKEAAPSQEELPTIPEEDEGEGKGEEESAVAKITSSKKSKFEDVVNLHIRA
DLNCLKVFIRGQSHRIAEISIEGLVSEVLMRRKAVEVLANLKNIVILDCDEEALYKQCVS
IADKEVFAFRMVNYTDATEGDAYLDMGKVDTSITLMVGCIQVIFLNKFVSSILAFINNFQ
AAKEALAEVTVQAAEKAATGVMELAERSTRISLDVDFNAPLVFLPQSSSSTNVIVADLGM
VTVKNCFALVDSQVHVKIPPIMDTMTVGLSDLKMYRTTFEKGRFQGEIQLLKPVNLDLSI
QRNLSASWYHSIPDIKITAHLKPMNLILSQDDMTMVLRTLGENLSETSDAAPPPPSPPTV
DRSVTATTKGLQGTGGNLVVTAAVVETQKSTKLKNTLKVDFTFDSMTLVLYSPNGTEVQV
LDSRDDQLKLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRRRVKNITARMMATRP
SAGRNVMVEVNYKQGCDGTSLETVVQDVYLCASMEFLLTVADIFLKASQQGFSSAVPKNS
SSTKPTVTATAASKEPAPVAVKSEMIVLVKNPKIVFVADLTRADAPALVMTMECELVIKS
NPDGQLMTAVVKDLKVVACPFLKEKRRNKETTVLQPCQVFFKSTQSSTSPQAMEVCIKAL
TLKVSPIIINTVITIQSVLSPAGADTPQSELESPVPPDLWECRAWRDLKLWFLEEEGKDE
DAQSLVPLIPQGESLQVAIYSICLTLEAGVGHRTVPMLLAKSSFHGDVKNWSTLIDLHSQ
LNLEVHYFNEVMGVWEPLLEPVEDETRDGFRSWILGLKMKKKPVKYSGISDEVDYSIPDY
KTVISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQTSESFQEDEAPFVVKNRLGLTVS
VMYSELFCPLGREAVEHRVELQNGESLNMDYRRTTSHSDQFSAMTSLVAKDYFIQPTPAG
HTSASVIPLIKVGRGMYSVLHKDSGVTRFLVCQIYSVQGSKHIKIRSPFQIINHFSIPFR
VMEGSMCLGISLPTEEFCVPLDSYRSKLSLQPVTEGDNHYDCSEGFSYESVSQQPGTRVQ
QTCHRHGNSASVLMVNIVPLKDTVTSQHTGVAGEHFDEPYILHLWPSVLLRNLLPYPITY
RLQDSEEPAPITLMEGHSAELHTAVMDLSSLELRLLDYLGQDWKAHYGLRGNQDEITFIV
FHSLHGEEEEVRLGERKRAELDIAVHVKYDAGQTEVAIHSPYWMVNKTGRLLQYKADDIH
RKHAMDYDMPLLFSFKPRNFLNNNKVRLMISDSELSDDFSLDTVGSYGEVKCKGRHKDYL
IGVKIDPSSFSLTRIVSFVPYYLLVNRTKHVIRVGEEGQDHWTEARPHQAAIPFWPERDS
KKLKVKVEGCQSTPQTMDFTKPENCLLLHLDNTLGGVIVDVNLSDHSIIIRFSDYHDGAA
PFLIINHTKEQTLGFYQSSQKEKDKLSPGKAVYYTWAEPTGSRFLVWQCGSYSGELKSEE
DLRLDVNEEGKLYLISFYEGLQRVALFTEDRRIYKLLCESEKAELAEQEIILSLQDVGVS
LVNNSSHQEVSFIGITSSDVVWEFKPKKKSRWKPLSFKYAALLETHFREYTESGQVDNAI
LDLESNFQVSLTPNRQDMRMMKPYDAPIRRNFLPGVKVEYSISARQSTYRVQINRIQIQN
QLPGAIFPHVFYPIKLPKSVTMDSEPKPLTDISIVTRAAGHSDISRIKYFMVLIQEMDLK
LDLGFLYAILDLFTLENASVMTSEQMVELFEKDIEYLKTEMNHISAADTPPISLXEYFHI
SPIKLHLSFSLSSGGEDGNKEKRETEVIPVQSLNLLLKSIGATLTDVQDVVFKLAYFELT
FQFRTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGA
IQGPEEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAMTMDEEYQQKRRETMNK
QPSGLREGLTRGGKGLVSGFVSGITGIVTKPIRGAQKEGMAGFFKGVGKGLVGAVARPTG
GVIDMASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREGVGSQILQKMVVYTD
WSRTGSGGGDDDDEKKRVAFTDWSRTGSDGDDDCYSRTAKS
NT seq
9486 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttctgggggactacgttgtg
aaccttgacagctcacaactcaagctcgggatttggggaggtgatgctgtgctcagaaat
cttgaaataaaggaaaatgccttgaggcaacttgacattccttttaaagtaagagccgga
catataggacgcttggagctgaagattccatggaagaatctgtacaaccagtcagtggaa
gctacactggatggagtttacctgctcatcgtgcccacagccagtataaagtatgatgcg
gagaaggaggagaaacagcttcaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcgaaacaagaaaaccctgcacttgagaagcaggacacctttgtg
gagaaactggtgacgcaggtgatcaagaacctccaggtgaagatctccaacatccacatc
cgctatgaggatgatgtcaccaatcccaatcgcccattatcatttggaatgtcactacag
aacctcagccttcagacagcagatgagaactggaaaccttgtctcttgaatgagaaagcc
aagctgtttttcaagcttgtccagttgaacaatctctttgcctactggaacgtgaacgca
acgctgtactctaatcacatgccagatgaggccctgcgatgcctccagaacagcatggac
atctacagttccacccccatgaaacacgatttcattttttgtccgataacggccaatgcg
aagctgtgcatgaacccccggtcagacgtgaacttctcctctcccaaggtggacttggtg
gtcaacctgagagaggtggctgtggagctcaacaggccacagtatgtcagcattctggag
ctactgggctcggtggatatgatgtcacgcaacctgccgtacaggaaataccgtccgcaa
gtccacgtgcacaccaacgcctacatatggtggcagtatgtgattacgggcatcatggag
gtggacgtgaagccacggctgcacatgtggtcgtggcagtgcgtccgctgccaccgacag
acagtcaagcgttacagagcgctctacaagtccaagatcaccaacaagaagcccactgag
aagctgctcagggaactggaggagactgagcggactctggatatctttaacatcacgctg
gccaggcagcaagctgagatggaggcgaacaaggcaggtctgcgtatctttcgtccgggg
gtggaggaggaggaatctcagggctggttgggctggatgtggtccggctggtcaggagat
ggcggcaccaaggccaaggaggtcaagaccggagcttttggtgagtttatgacttctgcc
gagaaggccaaactctacactgccattggctacagtgagatagctgtcaatcacaacctg
ccaaagaattttgaggacattaagattaatttccacatgaagagtatgtctttctcagtg
aaagacaacaaggatcaaaatgaaatcctcaaactcacagttgaaaacctgaaatccatg
ctgacccagaggcccggagcaaaagccattaagctgtcggcccagcttagtctgtttgag
gtgacaggactggccaataatcggccggcgcccacgctgctgtcatcgaggaaggctgcc
acggtaacggggacccccctgctggacatcctgtttgagacaaaccctctggatgagagt
gctgaccagcggctccgtgtcgagtcccagcctctggagatcatctatgacgctgtgacg
gtgaacagcatgtctgcgttcttcttgccgcctgatgacctccagctagacgagctaacc
aacgccactctcatgaagctggagcagttccgagaccgcacctccacagggctgatgtac
gtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctatgtgatc
gtgccccaaaccgggttctacgactccactcagaacctcatgctattggacctgggtcac
ttcaaggtgtctagtctgagcagaaaggggctaccccagctctctgtagggagcagtact
atacaggacatcatgtcccaagcctacgacagcttcgacatcaagctcagcagcctacag
ttcctctacagcaagccagacgggaactggaggaaagcccgtaagctgaagcagtcggcc
ctccacatcctggagcctgtcgatgtcaaggtggtgttcagcagagccatggtggtcaca
gactcacgcatgcccaagtttaagatcttcggggagatgcctctcttgtctctgaggatc
tctgatgataaggtgcgggccgtgctggaactgattgacagtatcccactgccggcgagc
aggccggccccgcgcagcaccaacatacactctacacctaaggctccaaagcagtcgtac
accgctcagctaacccccaggcaaccaaccatggctgaactgcgcaactccctcatatgg
gaatcaggctcagaggaggacctgttctacgatgctcccagctctcctatagacgaccat
ccgttcttccccgacaacatgcccagccctatgcagcgctccgactcggtcaagaggaga
ggtctggtcaagaaagaccccaagaagaacatgaccgacttcctcatgacgtttgagatc
aacaagctgtctgttcagctgtgtcgtctgtctggaggccaggaggtcacagtgttacac
ctgggcaccgagcggctgggctctgagctaaagctacgtaccttcgacatgacatctaac
actttcctacgagagatctgcctagagtgctcagagtatatggattcagaggagaagaaa
gtgcacctgatcaccactctagacaacacagaggaggacctcctcacattggagtacact
aaggctgataagaacgggccagaattcaagtctcagtacaagaacactgaacaatcagta
aaggtgaacttctcgtctctggacatacacctgcacacggaggctttgctcaacgccatg
aacttcctgaacggcctcctccccccgaccaaggaggcggcacccagccaggaggagctg
cccaccatcccagaggaggacgagggagagggaaagggggaggaggaatcagccgtggca
aaaataacatcttctaagaagtcaaagtttgaggacgtagtgaatttgcacatcagagct
gatctcaactgtctgaaggttttcatcagaggccagagccacaggatagcagagatcagc
attgagggcctggtgtcggaggtgctgatgaggagaaaggcggtggaggttctggccaac
ctgaagaacatagtcatcctggattgtgatgaggaggctctgtacaagcagtgtgtgtcc
atagctgataaggaggtgtttgctttccgcatggtgaactacacagacgccactgagggt
gacgcctatctagacatgggtaaagtggacaccagcatcaccctgatggtgggctgcatc
caggtcatcttcctcaacaagtttgtctcctccatcctggccttcatcaacaacttccag
gcggccaaggaggccctggctgaggtgactgtgcaggcagcggagaaggcagccacgggg
gtgatggagctggctgagcgcagcacgcgcatctctctggatgtagacttcaacgctcct
cttgtcttcctgccgcagtcctcctcctccaccaacgtcattgtggctgacctcggcatg
gtcacggtcaagaactgcttcgccttggtcgactcccaggtgcatgtcaagatccccccc
atcatggacaccatgaccgtgggcctcagtgacctcaagatgtacagaaccacctttgag
aaggggaggtttcagggggagatccaacttctgaagccggtcaaccttgacctgtcaatc
cagaggaatctgtcggcctcctggtaccacagcatccccgacataaagatcactgcccac
ctcaaacctatgaatctgatcctgagtcaggatgacatgacgatggtgttgaggactctg
ggtgagaacctgtcagagacgtcagatgctgctcccccccctccttctccgcctacagtg
gaccgctccgtcacggccactaccaaaggcttgcagggcacaggaggcaacctagtggta
actgctgcagtggtcgagacccagaagagcactaagctgaagaacacactcaaagtagac
ttcacgtttgattccatgactctggtcctgtacagccccaatgggactgaggtgcaggtg
ttggactcgagggatgatcagctgaagctggctgagttcaccctggggaccatctctaca
tctgtccacatgttctcagacggatccatgaaggcctccgtcaaactcacagactgcctg
ctagatgacaagagacgcagagtcaagaatatcactgccaggatgatggcgacgcgtccg
agtgctgggaggaacgtgatggtggaggtcaactacaagcaggggtgtgacggcacctct
ctggagacggtggtgcaggacgtctacctctgtgccagcatggagttcctgctcaccgtg
gccgacatcttcctcaaggccagccagcagggtttctcctcagccgtccccaagaacagc
agcagcactaaacccacggttacagccaccgctgcttccaaggaaccagctccagtggcg
gtcaagtcggagatgatcgttctggtgaagaacccaaagattgtctttgtggccgacctg
acgcgtgccgacgccccggccctggtcatgaccatggagtgcgagctggtgattaagagc
aaccctgatggtcagctgatgacggcagtggtcaaggacctgaaggtggtggcctgtccc
ttcctgaaggagaagaggaggaacaaggaaaccactgtgctgcagccctgccaggtgttc
ttcaagagcacacagtcctccacctccccgcaggctatggaggtctgcatcaaggcactg
acactcaaggtgtcgcccatcatcatcaacacagtgatcaccatccagtcggtgctgagc
ccggccggtgcagacacgccccagtctgagctggagagccccgtacccccagacctgtgg
gaatgccgggcctggcgggacctcaagctgtggttcctggaggaggagggtaaagacgaa
gatgcccagtccctggtcccgttgattccccagggcgagtccctgcaggtggccatttac
tccatctgcctgaccctggaggctggggtgggccaccgcaccgtccccatgctgctggcc
aagtcctccttccacggggacgtcaagaactggagcaccctcatcgacctgcacagccag
ctcaacctggaggttcactacttcaacgaggtgatgggggtgtgggagcctctgctggag
cccgtagaggacgagaccagagacggcttcagatcctggattctgggattaaagatgaag
aagaagccagtaaagtactcaggtatatcagatgaagtggactacagcatccctgactac
aagaccgtcatcagcatcagcagcaaggaccagctcaacatcaccctctccaagtgtgga
ctgggcatgctcagtaacctgggcacggcctttgcggaggcggccaagcagacatcggag
agtttccaagaggacgaggctccgttcgtggtgaagaaccgtctgggtctgactgtgtca
gtgatgtacagtgagctgttctgccccctgggccgcgaggccgtggagcaccgggtagag
ctgcagaacggagagagcctcaacatggactaccgtcgcaccacctcccactcagaccag
ttctctgccatgacctcgctggtcgccaaggactacttcatacagcccactccggcaggc
cacacttcagccagcgtgattccgttgatcaaagtggggcgtggcatgtacagtgtcctg
cacaaagactctggggtcacccgcttcctggtctgtcagatctactctgtgcagggaagc
aagcacatcaagatccgctctcccttccagatcataaaccacttttccatcccgttcaga
gtgatggagggctccatgtgtctggggatctcactgcctacagaggagttctgcgttcct
ctggactcctacaggtcaaagttgagcctgcagccggtaaccgagggagacaatcattac
gactgttcagagggtttcagctacgagtcagtgagccagcagcctggcacacgtgtacag
cagacctgtcatcgacatggcaacagcgccagcgtgctcatggtcaacatcgtccctctg
aaagacacagtgacatcacaacacacaggagtggccggggagcactttgacgagccctac
atcctgcacctgtggccctccgtactgctccggaaccttctgccttaccccatcacctat
cgcctacaggacagtgaagagcccgcccccatcaccctgatggaaggccactcggcagag
ctacacactgccgtcatggacctgtccagcctggaactccgcctcctcgactacctgggg
caggattggaaggcccactatggtctccgtggcaaccaggacgagatcaccttcattgtg
ttccactccctgcacggtgaagaggaggaggttaggttaggagagaggaagagagcagag
ctggacattgcggtgcatgtgaagtacgacgcgggccagactgaggtggccatccattct
ccctactggatggtgaacaagacgggccgcctgctgcaatacaaggccgacgacatccac
cgcaaacacgccatggactacgacatgcccctgctcttctccttcaagccacgcaacttt
ctgaacaacaacaaggtgcggctgatgatctcggacagcgagctgtctgatgatttctcc
ctggataccgtgggtagctatggtgaagtaaagtgcaaagggaggcacaaagattacctg
atcggggtgaagatcgaccccagcagtttcagcctgacccgtattgtgagctttgtgccg
tactacctgttggtgaacaggaccaagcatgtgatcagggtgggagaggagggccaggac
cactggactgaggccagaccacaccaggcagccatcccattctggcccgagagggactcc
aagaagctcaaagtcaaagtggaaggctgtcagtcaacccctcaaaccatggacttcacc
aaaccagaaaactgcctgttgctgcacctggacaacactctgggtggggtcattgtggac
gtgaacctatcagaccactcaatcattatccgtttctcggactaccacgacggagccgcc
cccttcctcattatcaaccacaccaaggagcagacgctggggttctaccagagcagtcag
aaggagaaggacaagctgagcccggggaaggcggtgtactatacctgggctgagcccacc
gggtcacgcttcctggtctggcagtgtggcagctacagtggcgagctgaagagcgaagag
gacctgcggttggatgtgaatgaggagggtaagctgtacctcatctcgttctatgagggc
ctccagcgggtggcgctgttcaccgaggaccggcggatctacaagctgctgtgtgagagt
gagaaggctgaactggctgaacaggagatcatcctctccctacaagacgtgggtgtctcc
ctggtcaacaacagcagccaccaggaggtgtccttcatcggcattaccagttcagacgtg
gtgtgggagttcaagccaaagaagaagtctcgctggaaacccctgagttttaaatatgca
gcgctgcttgagacccatttcagagagtacaccgagagtggacaagtggacaacgccatc
ttagacctggagagcaactttcaggtgtctctgacgccaaacaggcaagacatgaggatg
atgaagccatatgatgctccaatcaggaggaacttccttccaggggtgaaggtggagtac
agcatatcggcccgccagagtacctaccgtgtccagatcaaccgcatacagatccagaat
cagctgcctggagcaatcttcccccatgtcttctacccaataaaactacccaagtctgtc
accatggactcagagcccaaacctttgaccgacatcagcattgttaccagggcagccgga
cactcagatatctcacgcatcaagtatttcatggtgctgatccaggagatggacttgaag
ttggacctgggtttcctctacgccatcttggatctgttcaccctggagaacgccagtgtg
atgacatcagagcagatggtggagttgtttgagaaggacattgagtatctgaagactgag
atgaaccacatctcagccgctgacacgccccctatcagtctcnttgagtacttccacatc
tctcccatcaagctgcacctgagtttctctttgagttctgggggagaggatggtaataag
gagaagagggagactgaggtcatccctgtccaatccctcaatctgctgctgaagagcatc
ggagcaaccctcactgacgtgcaggacgtcgtcttcaaattggcctatttcgagctgaca
ttccagtttcgcactacccagcaactacaatgggaggtcatcagacactactcgaaacag
gcgataaagcagatgtatgtgctggtgttgggcttggacgtgctgggaaacccctttgga
ctgatccgaggtctgtctgagggagtggaggctttcttctatgagccctatcagggagct
atccaggggccagaggagtttgtggagggtatggcactgggggtgaaggcgctggttgga
ggagcagtggggggcattgcgggcgctgcctccaggataacaggcgccatggcgaagggt
gtggctgccatgacgatggatgaggagtaccagcagaagagacgagagactatgaacaag
cagcccagcggcctgagagagggcctgacccgtggaggcaaaggactggtgtctggcttc
gtcagtgggatcacagggatcgtcaccaagcccattagaggtgctcagaaggagggtatg
gcaggcttctttaagggtgttgggaaggggctggtgggggctgtggccagacccacagga
ggcgtcatcgacatggccagcagcaccttccagggcatcaagagggcggctgagacgtct
caggacgtggagagtctgcgtccgcctcgcttcatccacgaggacggggtcatccgacca
tataaggagagagaaggcgtcggcagccagatattacagaaaatggtggtctacactgat
tggagtagaactggcagtggtggtggtgatgatgatgatgaaaagaaaagggtggctttc
actgattggagtaggactggcagtgatggtgatgatgactgctacagtcgaactgctaag
tcctag
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integrated database retrieval system
