Coregonus clupeaformis (lake whitefish): 121584559
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Entry
121584559 CDS
T08357
Name
(RefSeq) nuclear receptor ROR-beta-like
KO
K08533
RAR-related orphan receptor beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121584559
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121584559
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121584559
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121584559
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
DUF2716
Motif
Other DBs
NCBI-GeneID:
121584559
NCBI-ProteinID:
XP_041756442
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Position
16:complement(28797146..28835379)
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AA seq
471 aa
AA seq
DB search
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAAYSCPRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRILNERQQQTCEAEALAR
VYSSSLTNGLSTLNHEIGGTYANGHVIELPKGQVNGGAPGGYYHGMDSTQPSPDQSGLDM
AGMKHIKQEPVYDLTPVSNLFNYSAYQDSQLAHSNVSMGELDRIAQNIIKSHLETCQYTA
DELQQLAWQTHSYDDIKMFQSKTRDVLWQQCAIQITHSIQYVVEFAKRISGFMELCQNDQ
ILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQMFKALGCDDLVSAVFDFAKSLCS
LQLTEEEIALFSAAVLISTDRPWLMEPRKVQKLQEKIYFALQHIMQKNHMDEDALAKLIG
RIPTLSAVCTLHTEELQAFQQLHPETVNVLFPPLYKELFNPDPNAAITMPK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgcgagcccaaatcgaagttataccgtgcaaaatctgtggagacaagtcatcaggaatc
cactatggagtcatcacgtgtgagggctgcaaagggttcttcagacgaagtcagcagaac
aatgctgcatactcctgccctcgccagaggaactgtctgatcgacaggaccaaccgaaac
cgctgccagcactgccgcttacagaagtgtctcgcactcggaatgtccagagatgctgtg
aagtttggccgcatgtccaagaagcagcgtgacagcctgtacgctgaggtacagaagcac
cagcagcggatcctgaatgagcggcagcagcagacgtgtgaggcagaggcccttgcgcgt
gtctactcgtccagcctgaccaacggccttagcaccctcaaccacgagatcggaggcaca
tacgccaacggccacgtcatcgagctccccaagggccaggtgaacggtggtgccccgggt
ggctactaccatggtatggactccacccagccatctccggaccagtcgggcctggacatg
gcgggcatgaagcacatcaagcaggagccggtgtacgacctgacccccgtgtctaacctg
ttcaactacagcgcctaccaggacagtcagctggcgcacagcaatgtcagcatgggagag
ctagatcgtatcgcccagaacattataaagtctcacctggagacctgtcaatacacagca
gatgagctccagcagctggcctggcaaacacactcctacgatgacatcaagatgttccag
agcaaaacgcgagacgtgctgtggcagcagtgtgccatccagatcacccattccatccag
tatgtggtggagtttgccaagcgcatctcaggcttcatggagctttgccagaacgaccag
atcctcctgctcaagtcaggttgtctggaggtggtcctggttagaatgtgtcgggcgttt
aaccctctcaacaacacagtgctgtttgaggggaagtacgggggcatgcagatgttcaaa
gcactaggctgtgacgacctggtcagcgctgtgtttgactttgccaagagtctgtgctct
ctgcagctcactgaggaggagatcgctctgttctccgcagcagtgctcatctccacagac
cggccgtggctgatggagcccaggaaggtgcaaaagctccaggagaagatctactttgca
cttcagcacatcatgcagaagaaccacatggacgaggacgcgctggctaagctgattggt
cggatacccacgctgtcggccgtgtgtactctccacaccgaggagctgcaggccttccag
cagcttcaccccgagacggtgaacgtgctcttccccccgctctacaaggagctgttcaac
cccgaccccaatgcagcgatcaccatgcccaagtga
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