Coregonus clupeaformis (lake whitefish): 121584651
Help
Entry
121584651 CDS
T08357
Symbol
zgc:152968
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121584651 (zgc:152968)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121584651 (zgc:152968)
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
RNases
121584651 (zgc:152968)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Zwint
Motif
Other DBs
NCBI-GeneID:
121584651
NCBI-ProteinID:
XP_041756599
LinkDB
All DBs
Position
16:complement(28373430..28391225)
Genome browser
AA seq
1194 aa
AA seq
DB search
MDRTTSATLNGGQHRDRRDLCKRPHCLYKHVKDERGMFDNTLYGSPVTAAAGVWKTHSTS
INGAPKVNEAKDPCLLELERINKEIETVKNEVEKEQRRLSRYQTVQVDSERTGSKKVLIA
KSETPGKDLNGNSVKSLHRQSTTVYSPARRKYVVDNSKPRTDLEYDPLSNFSASLRSSGC
SEYKQGNEQKVRGRQGAKRTRENVCKEDQTKPPSQELTASPASSNKLVDDSEEEEGVLII
DIPPLESDRKKSRAQKPCKTTTNQSQEIKEEVHPVPVPTVAHAPLTIPLPVSTPGPEVVK
VISPPAVSEIVKDDNLNTYGLSSVSASQENEGEPSAVSVFDDLSKCLENLRSESERIVCY
QEAEATAESNGGTEPVSSLQTLYHNDPVVKTDVNLLMAEPGLLERELASNCVENSNHLQP
NEVLYEHVSSLPHHVLVPPSVSSPHKHPIETQRSEQPAAQSSAQSYWSPVQSVSSVPCLQ
KIPGQTPGPGLDFALPSPVPVANFVEQAATTAGITQCQLLYGPTTSGTNGVELQSASFEQ
PTVEAMNEQVVIDSSSEELEYSELSDSDTMEECYRIFMEEANKGDEGSTDQASTPVGAVD
VETPGLAVKPKPLPGPRKRVAHVSRYTEPPVGKSKAQVIVPFRGGVPQLSNPSKIQQLQQ
RASVLSAALKGGQAFISSNSQRKMVTLASPAHQASHHATHHPVQYLIHQPTHHHTTMQNS
YVNIIPVGTAIQVGNNLHFILPEGSYTLPITSANCPVTPVQTPVHTPVTPVPVQPQPTAY
IPAKPIPTKRKAKTRPEVGAKVPHDVRQRYVNLFVEEFLKTSVTVQDAFEKALAEEKTVY
DRSINKLKYLSVAVNALKRLKNQSTVFVKAGNETNVQMSRGNIPLNEKALWANGDAALYD
SLKEHILSEEILTENNYPLQHPEKSGSAILYREDYKKGITDPLKRICCRCGATYSVNQAG
KHTRKEECNYHYGKGVEKKVPGGVETRYSCCEGVAGCPGCQVFKLHVHDAVRLDGFVSTL
PRPASDKICPGVFSIDCEMCYTTQGLELARVTVVNSSLQVIYDTFVKPDNEVIDYNTRFS
GINEADVKGTSSSLRDVQETLLSFVSAETILIGYGLETDLCALKLLHGTVVDTSVSFPHR
LGLPHKMTLHNLTADYLRRIIQESVGGHDSAEDAAACMELMLWKVKEDGKTKRW
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggacagaacgacatcagcaactctgaatgggggacagcacagagacagacgtgacctc
tgtaagcgaccccactgtctgtacaagcatgtcaaagacgagcgaggaatgtttgacaac
accctgtatggatcaccggtaacagcagcagcaggtgtttggaaaactcattccacttcc
atcaatggagccccaaaggtcaatgaagccaaagacccttgccttttggagttggagagg
atcaacaaagaaatcgagactgtgaagaatgaggttgagaaggagcaaaggagattatcc
cgttaccaaactgtgcaggtggacagtgaaagaacagggtccaagaaagtcttgattgcc
aaatctgaaacaccaggtaaagatctgaatggaaatagcgtaaaatctttacaccggcag
tccactacagtctattctcctgcccggaggaagtatgtggttgacaactccaaaccgagg
actgatttggaatacgaccccttgtccaacttctcagcttctttgcgatctagtggttgt
tctgagtacaaacaaggtaatgagcagaaagtgagaggtaggcaaggtgcgaagaggact
agagagaatgtttgtaaggaggaccaaactaagccaccttctcaagagctcactgcctca
ccggctagtagtaacaagctagttgatgactctgaagaagaagaaggggtcctcatcatt
gatattccacctctggagagcgacagaaagaagagtcgggctcagaagccctgtaagacc
accacaaaccaatcacaggaaatcaaagaggaagtccaccctgttcctgttcctactgtg
gctcatgcgccacttactattccacttcctgtgtccactcctggtcctgaagtagtcaaa
gtcatatccccacctgcagtgtctgagattgtgaaagatgataacctcaacacttatggc
ctatctagtgtttctgctagtcaggaaaatgaaggtgaacccagtgctgtgagtgtattc
gatgacttgtccaaatgcttggaaaacctgaggagtgaaagtgagagaatagtttgttac
caagaggctgaggccactgcggaaagcaacggtggcacagaacctgtatcatctttacag
acactttaccataatgatccagttgttaagactgatgtcaacttactgatggcagagcct
ggattgcttgaacgtgagcttgcttccaactgtgttgagaacagtaaccatcttcaaccc
aatgaagtcttatatgaacatgtatcttcactacctcatcatgttttagtccctccctct
gtctcctccccccataaacaccccattgagacccagagaagtgagcagccagcagcacag
agctctgctcagagttactggtcacctgtacaaagtgtatcatcagtgccatgtcttcag
aaaatcccaggccaaactccagggccagggcttgattttgcccttcctagtccagttccg
gtagcaaactttgtagagcaagcggccactaccgcgggtatcacccaatgccagctgtta
tatgggccaactacgtcaggtactaatggagtagaattacaatctgcttcttttgaacag
cctaccgtggaagcaatgaatgaacaagttgttattgattcaagttctgaggagcttgag
tattctgagttatctgatagtgacacaatggaggaatgctatcgcatcttcatggaggaa
gccaacaagggtgacgagggatccacagaccaggctagtacacctgtaggagctgtggac
gtggagacaccagggttagcagtgaaacccaaaccgttgccaggacccaggaagagggtg
gcccatgtgtccagatatactgagccgccagtgggcaaaagcaaagcccaggtgatagtt
cctttccgaggaggagtcccccagttgtccaacccctctaagatccagcagctgcagcag
agggcctccgtgttgtccgctgctctaaaaggaggccaggcgttcatctcctccaactca
cagagaaaaatggtgacgctggcttctcctgctcatcaggccagtcatcatgccacccat
catccagttcaatacctcattcaccagccaactcatcaccatactactatgcaaaattcc
tatgtgaacatcatacctgtgggaacagccatccaggtgggcaacaacctgcacttcatc
ctcccagagggaagctacactctgcccatcacttcagctaattgtccagtcaccccagtc
caaaccccagtccataccccagttacccctgttcctgtacaacctcagcctactgcctat
atccctgctaagcccattcctaccaaacgtaaagccaagacgcgtcctgaggtcggcgcc
aaagtcccacatgacgtacggcagcgctatgtaaacctgtttgtagaggaattcctcaaa
acatctgtcactgtacaagatgcttttgaaaaggcacttgctgaggagaagactgtgtat
gatcgcagcatcaacaaactcaagtatctgagtgttgccgtgaacgcactgaagaggctg
aagaaccagagcacagtctttgtcaaagctggaaatgaaaccaatgtccagatgtctaga
ggaaatattccactcaatgaaaaagcactttgggcaaatggagatgctgcattgtatgac
agtttgaaggagcacattctgtcagaggagatattgacggagaacaactatcctcttcag
cacccagaaaaatcaggcagtgccatactgtaccgtgaagactataagaagggaatcact
gatcctttgaagaggatttgctgtcgttgtggggcaacttactctgtgaaccaagcggga
aagcacactcgcaaggaggagtgcaactaccactatgggaaaggagttgagaagaaggtt
ccaggtggagtggaaacacgctatagctgctgtgagggtgtggctggatgccctggatgc
caagttttcaagttgcatgtccatgatgcagttcgcttggatggttttgtcagtaccctt
cctaggcctgcctctgacaagatctgcccgggtgtgttctcaatcgactgtgaaatgtgc
tacaccactcaaggtctggagctggccagagtgactgttgtcaactccagtttgcaggtc
atctatgacacctttgtgaaacctgataatgaagtcattgactacaacaccaggttttca
ggcatcaatgaagctgatgtgaaaggaacaagctcgtccctacgtgatgttcaggagact
ctactgagctttgtcagtgcagagactatactgatcggctacggcttggaaactgacctc
tgtgcactgaagctgctccacggcaccgtggtggacacctctgtgtcgttcccccaccgc
ctgggcctgcctcataagatgacccttcacaacctgacagcagactacctgaggaggatc
atccaggagagtgtgggtggccatgactcggcagaagatgctgctgcctgtatggagctc
atgctgtggaaggtcaaagaagatggcaaaactaaacgatggtga
DBGET
integrated database retrieval system
