Coregonus clupeaformis (lake whitefish): 121584695
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Entry
121584695 CDS
T08357
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121584695
04020 Calcium signaling pathway
121584695
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121584695
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121584695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
121584695
NCBI-ProteinID:
XP_045081656
LinkDB
All DBs
Position
16:42244785..42406375
Genome browser
AA seq
2369 aa
AA seq
DB search
MARFEEELSNRRGGVSRGAGRPAGPPSGPRVYKQSMAQRARTMAIYNPIPVKQSCLTVNR
SLFIFSEDCIIRKYAKKITECPFEYLILATIIANCIVLALEQHLPASDKTPMSERLDDTE
PYFIAIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGMLATVGADFDLRTLRAV
RVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGMLLFFAILMFAIIGLDFYMGKFHRTCF
RTDTGEQAAEFPCGMEAPARTCENGTVCQEYWIGPNYGITNFDNILFAILTVFQCITMEG
WVDILYNANDASGNTWNWIYFIPLIVIGSFFMLNLVLGVLSGEFAKERERVEKRQEFLKL
RRQQQIERELTGYLEWICKAEEVMLAEEDKHAEEKSPLDGAWYKRKHNNPVLKRAKKSKN
DLINAEEGEDHFTDISSVAPPGSPFTRASQKSSKNDSASYFRRKEKRLRFTIRRLVKAHS
FYWTVLCLVGLNTLCVAIVHYDQPEWLTYALYLAEFVFLGLFLTEMSMKMYGLGPRNYFH
SSFNCFDFGVIIGSIFEVIWAVVKPGASYGISVLRALRLLRIFKVTKYWNSLRNLVVSLL
NSMKSIISLLFLLFLFIVVFALLGMQLFGGMFNFEEETPTTNFDTFPAAILTVFQILTGE
DWNAVMYHGIESQGGVRRGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEE
EQEVAITKKMALQKVKEVKEVSPMSAANISITVFVKQSQGAISRSSSVCSVNSLKEQQKS
LKMMSVWEQRTTQLRRHNLRASSEALYSELDPEERLRMSSALHIRPDMKTHLDRPLVVEP
HDGPGPMGHLKPRTPEETDIPGDQAGPQPRRRHRDRERPIDEANENGDPGKEGRHHVHHS
RSKDPDGTRGKEGKSERSHNRVGGRRHHHQTSVDEEGGGGTGTGEREHRHHHSHRQAREG
NGTVNSGRKDERRSRHKDGRSGERCSRGENGANGERRRHKTHSSRGQSTLEGEEHSERGK
GHKDKYVESEGDSLATSPQQDPGDQRWGTEIAEDSDNQRNVRRTGQTAVHIPPDTFTSPP
GETTLIPMNSIDCETMPMNEEKKTLEELTRSGPRPILPYSSMFVFGQTNVVRRLCHYIVS
LRYFEMCILVVISMSSIALAAEDPVQANAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLL
LHPGSYFRDLWNILDFIVVSGALVAFAFSGSKGKDISTIKSLRVLRVLRPLKTIKRLPKL
KAVFDCVVNSLKNVFNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCRGSFLD
YDKDEVAAQPRVWKKYEFHYDNVLWAFLTLFTVSTGEGWPDVLKHSVDATFEDQGPSPGY
RIEISIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSECSLEKNERACIDFAINAKP
LTRYMPENVQSFQYRMWKFVVSPPFEYAIMIMIALNTVVLMMKFHGAPDFYEAMLKHFNI
VFTALFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDIVVTEINTTDRLLNLSFLR
LFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIELNE
DTAITHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSHRACDERSGNLEKECGSDFAYF
YFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKY
LDMYQILLHMSPPLGLGKKCPPRVAYKRLVKMNMPIADDNTVHFTSTLMALIRTALEIKL
ASGMVAQRLSDAELKKELTQVWPSLSQKTMDLLVTPHKPNELTVGKVYAALMIFDYYKQN
RAKRLKEQQQQQQQQNATGSQGKVGALFKPILPLTHKQENVKEKAMTNVEPPCELLPQPQ
SQALPTPRPRSTLLNNGGTLPGHDGTMKGSSSWVSEKSREVHRPRSKRTVQRGQSEDVPN
ITIPQESVEMRKMDTSGSTVPGPGSGLESQGRAVSMPRLNAELKRSKSRHSPGTLLAPVP
ACSPMKRSASTHAPQRPQEVNLRDFTLERPSTQERPQHHHHHRCHHHRRERDKKQRSLDR
TPSTAGTQEEPAAEPSSRDRVQDRGRSHERKHHSTVGEKQRYYSCDRYSSREHCNTTKSA
TTSCATSPSEVQEPSINKQGSGLVKGSPVMLTSGASTPSHGRRQLPQTPLTPRPRVAFKT
ANSSPVHFVSAKCGSGLPTLSPSRLSRGLSEHNALLHSGTSHIPSPITHISSEPFLGYSH
SDPQGQGSPYCSLWDELLSPYAARARSPWTARPQMRPGAIHLPPPPQQRRAVPNGYHFTF
GGNANASLGSGSGARAPRYYHKAEEDEWC
NT seq
7110 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcttcgaagaggaactatctaaccggcgtggaggggtctcaagaggggcaggt
aggccggcaggccccccaagcggccccagggtgtacaaacaatcaatggcccaaagagcc
aggacaatggccatttacaaccccatccctgtcaagcagagctgtcttactgtcaaccgg
tctctattcatctttagtgaggactgtatcatacggaaatatgccaaaaagattaccgaa
tgtccatttgaatacctgatcctggccaccattatagcaaactgcatcgtccttgccttg
gagcagcacctaccagccagtgacaagacccccatgtcagagcgcttggacgacacagag
ccctattttattgcaatattttgttttgaagctggcattaagatcatcgcccttggcttt
gcgtttcacaaaggctcctatcttcggaatggctggaatgtaatggactttgtggtggtg
ctaacagggatgctggctacagtgggagcagactttgacttgagaactctgagggcagta
cgggtcctgaggccactgaaactggtgtctggaatccctagtcttcaggtggttctaaag
tccatcatgaaagccatggtgcctctgctgcagattggcatgctgctcttctttgctatc
ctcatgtttgccatcatcggcctggacttttacatgggcaagttccaccggacctgcttc
aggactgatacaggtgagcaggcagcagagttcccctgtggtatggaggctccagcgagg
acttgtgaaaatggcactgtgtgtcaggaatactggatcggccccaactacggcattacc
aactttgacaacatcctttttgctattctgaccgtcttccagtgcatcaccatggaggga
tgggtggacatcctctataacgccaacgatgcctcagggaacacctggaactggatctac
ttcatccccctcatcgtcatcggatccttcttcatgctcaacctggttctgggagtcctg
tctggggagtttgccaaggagcgtgagcgtgtggagaagaggcaggagtttctgaagctt
cgcaggcagcagcagatcgagagagagctgactggatacctggaatggatatgcaaggca
gaggaagtgatgctggcagaggaggacaagcatgctgaagagaagtctcctctggatgga
gcgtggtacaagaggaaacacaacaacccagtgttgaaaagagccaagaagagcaagaat
gacctgatcaatgctgaggagggcgaggaccacttcactgacatctcatctgttgctccc
ccagggtctccgttcacccgggccagccaaaagagcagcaagaacgacagtgcctcctac
ttccggaggaaagagaagcggctccgcttcaccatcagacgcctggtcaaggcccatagc
ttctactggacagtcctgtgtctggtgggcctcaacacactgtgtgtggccatcgtccat
tatgaccagcctgagtggctcacctatgcactgtatttggcagagtttgtattcctgggc
ttgtttctgactgagatgtctatgaaaatgtatggactaggacctaggaactacttccat
tcctctttcaactgttttgattttggagtgattataggcagtatttttgaggtgatctgg
gcagttgtgaaacctggggcctcctacggcatcagcgtcctgcgagctctccgtctgctc
aggattttcaaagtcactaagtactggaactctctgaggaacctggtggtctctctactc
aactccatgaagtccattatcagcctgctcttcctcctcttcctcttcatcgtggtgttt
gccctactgggcatgcagctctttgggggaatgtttaattttgaagaggagacaccaaca
acaaactttgacacctttccagcagccattctcacagttttccagattctgacaggagag
gactggaatgcagtgatgtatcatgggatagagtcccaggggggcgttcggcggggaatg
ttctcctccatctacttcatcgttctcaccctgtttggaaactacactctcctcaatgtc
ttcttggccatcgctgttgacaaccttgcaaacgcacaggagctcactaaggacgaggag
gagcaggaggtggccatcaccaagaagatggccctccagaaggtcaaggaggtgaaggag
gttagccccatgtcggcagctaacatctccatcacagtttttgtaaagcaaagtcaaggt
gcaatctctcgcagctcgtccgtctgcagcgttaattcacttaaggagcagcagaagtct
ctgaagatgatgtcagtgtgggagcagcgcaccactcagctgaggagacacaacctgcgg
gccagcagtgaggccctgtacagcgagctggaccctgaggagaggctgcgcatgtcctcc
gccctgcacatccgccctgacatgaagacccacctggaccggcccctggtcgtggagccc
cacgacggccccggccccatgggccacctcaagccccggacccctgaggagacagatatc
cctggggaccaggccggcccccagccacgcaggcgccaccgggacagggagagacccatc
gatgaggccaatgagaatggagatccaggcaaagagggtaggcaccatgtccatcacagt
cgcagcaaggaccccgacgggactcggggtaaggaggggaagagtgagcggtcgcacaac
cgagtgggtggcaggaggcaccaccaccagacctcagtggacgaggaaggaggaggggga
actggaacgggggagagagagcaccgccaccaccattcccacagacaggccagagagggt
aacggcactgtcaacagcggacgcaaggacgagcgcaggtcacgccacaaagatggccgc
tcgggagagaggtgctccaggggagagaacggggccaatggggagaggaggagacacaag
acccacagctccaggggccagtccacactggagggagaggagcacagtgagagggggaag
ggccacaaggacaaatatgtggagtccgagggcgactccctggccactagcccccagcag
gaccctggagatcagaggtggggcacagagatagctgaggactcagacaaccagaggaac
gtcagacggacaggacagacagccgtccacatcccccctgacaccttcacctccccgcct
ggagagaccacccttatccccatgaacagtatagactgtgagaccatgcctatgaacgag
gagaagaagaccctggaggagctgactcggagcggacccagacccatcctcccatacagc
tccatgtttgtgtttggccagaccaacgtggtgcggcgtctgtgtcattacattgtgagt
ctgcggtactttgaaatgtgtatcctggtagtgatatctatgagtagcattgcattggct
gcagaggaccctgtccaggccaacgctccacgcaacaatgtgctcaagtatctggactac
gtcttcacgggagttttcacatttgagatggtgattaagatggttgacctgggcctcctg
ctccatcctggttcttacttcagagatctctggaacattctggacttcattgtggtcagt
ggcgcactggtggcatttgcattttcagggtccaaaggaaaggacatcagcaccatcaag
tccctcagagtgctgcgagtcttacggcccctcaagaccatcaaacgcctgccaaagctg
aaggctgtgtttgactgcgtggtcaactccctgaagaacgtcttcaacatcctcattgtc
tacatgctcttcatgttcatctttgctgtcatcgctgtgcagctgttcaagggaaagttc
ttctactgcaccgatgagtctaagggactggagaaggactgcagaggtagtttcctggac
tacgataaggatgaggtggctgcccagccccgggtgtggaagaagtatgagttccactat
gacaacgtgctgtgggccttcctcactctcttcactgtgtccaccggagagggctggccc
gatgttctgaagcactctgtggatgctacctttgaggaccagggtcccagtccaggctac
cgtatagagatctccatcttctacgtggtctacttcgtggtcttccccttcttcttcgtc
aacatcttcgtggctttgatcatcatcaccttccaggagcagggagacaaggccatgtca
gagtgcagcctggagaaaaatgagagggcctgcattgactttgccatcaacgccaagcca
ctgacccgctacatgccagagaatgtgcagtccttccagtaccggatgtggaagtttgtg
gtgtcacccccatttgagtacgccattatgatcatgatcgccctgaacaccgtggtgctc
atgatgaagttccatggagctccagacttctacgaggccatgttgaagcacttcaacatc
gtcttcactgccctcttctctctggagtgcattctgaagatcatcgccttcggtccgctg
aactacctgaaggatgcctggaacgtgtttgactttgtgacggtgctgggaagtataact
gacatcgtggtcacagaaatcaatacaacggaccggcttttgaacctgagttttctgagg
ctgttcagagcagctcgtctcatcaagctactgaggcagggctacaccatccgtatcctg
ctgtggaccttcgtccagtcctttaaggccctgccctatgtttgccttctgatagcaatg
ctgttcttcatctatgcaatcatcggtatgcaggtgtttggaaacattgagctcaacgag
gacacagccatcactcaccacaacaacttccgcacttttctccaggctctcatgctactg
ttcaggagtgccacgggggaggcgtggcatgagatcatgctgtcgtgtttgagtcacaga
gcctgtgatgagaggtcaggcaacctggagaaggagtgtggcagcgacttcgcctatttc
tactttgtctccttcatcttcctctgctccttcctgatgcttaatctgtttgtggctgtg
atcatggataactttgaatacctgactcgagactcgtctatactggggcctcatcatctg
gatgagttcatccgtgtttgggctgagtacgaccctgctgcctgtggccgtatcaagtac
ctcgatatgtatcagatactcctccacatgtccccacccttaggtttgggaaagaaatgt
ccgccaagagtcgcctacaagcggctagtcaagatgaacatgcccatcgctgatgacaac
acagttcacttcacctctactctcatggccctgatccggacggccctggagatcaaactg
gcctcagggatggttgcccagcgtctctctgatgctgaactgaagaaagagctcacccag
gtttggccaagtctctcacagaagactatggatctgttggtgacaccacacaaacccaat
gagcttactgttgggaaggtgtatgcagccctgatgatctttgactactacaagcagaac
cgagccaagaggctcaaggaacagcaacaacagcagcagcaacagaatgctactggctcc
caggggaaggtgggggctctgtttaaaccgatactgcccctgactcacaagcaggagaat
gtgaaggagaaggccatgaccaacgtggagcctccctgtgagctactgcctcagccccag
tctcaggccctacctacacctagacccaggtccaccctgctcaataatggaggcacactg
ccaggccatgatggcaccatgaaaggatcgtcctcctgggtgtcagagaagtctagagag
gtccacagacccaggagtaagagaactgtccaaaggggccagtctgaggatgtcccaaac
ataaccattccccaggagtcagtggagatgaggaagatggacaccagtggcagcacagta
cctggtcctgggtctggactggagagccaggggagagctgtgtccatgccccgcctcaac
gcagagctgaagaggagcaagtcgcgtcactccccggggaccctgctggctcctgttcct
gcctgcagcccaatgaagcgctctgcgtccacccacgccccccagcgcccccaggaggtg
aatctgcgtgacttcaccctggagaggcccagcacccaagaaaggcctcaacaccaccac
caccaccgctgccaccaccaccgccgagagagggacaagaagcagcggtcactggacagg
acgccaagcaccgctggtacacaagaagaaccggctgcagagccctcgtctagagacagg
gtgcaggaccgcggccgctcccatgagaggaagcaccactcgacggtgggggagaagcag
cgctactactcctgcgatcgctacagcagcagggaacactgcaacaccaccaagtctgcc
accaccagctgtgccacttcccccagcgaggtgcaggaacccagcatcaacaagcagggt
agtggtttggttaaaggcagcccagtgatgttgacctcaggggctagcacacccagccat
ggacgcaggcagctcccacagacccccctgacccctcgccccagggtggccttcaaaacg
gcaaactcctcccctgtgcactttgtgtctgccaagtgtggcagcggccttcccaccctg
agtcctagccggctgagccgtgggctgtccgagcacaacgccctgctgcacagtggcacc
tcccacatcccctcccccatcacccacatcagctctgagcccttcttgggctacagtcac
agtgacccccagggccagggcagcccgtactgcagcctctgggacgagctgctgagccct
tatgctgccagagcacgctccccttggactgcacggcctcagatgcggccgggggccatc
cacctgcctccgccaccccagcagagacgtgcggtgcccaacggataccacttcaccttt
ggtggtaatgccaacgccagcctgggctctggctctggtgccagggcacccaggtactat
cacaaggcagaggaggatgaatggtgctag
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integrated database retrieval system
