Coregonus clupeaformis (lake whitefish): 121584792
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Entry
121584792 CDS
T08357
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121584792
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
121584792
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
121584792
NCBI-ProteinID:
XP_041756849
LinkDB
All DBs
Position
16:36887277..36919952
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AA seq
1480 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVASEKQLIQRLNGDVLKTAERLYRAAWITKQQRINLDRLIL
TSAEASPAECCQHAKVLEDTQFLDGYKTLGFQESIYGEFLGRVRENPRLVASCLVAGERL
NQEHTQGVIYTVFTSLYGNCIMQDDESYLLQVLRYLVEFELKESDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPSKVTERFTPAQQERLFGEKGS
EGYRQKVAAAVEANEAKLVTLVNKFIGYLKQNTYCFPHNLRWIVSQMYKTLSCVERLEVG
EVRTMCTDLLLTCFICPAIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMADDDGDP
RRKNSLAKFDKSCVAAFLDVVIGGRAVETPPMSSMNLLEGLSRTVAYMTHSQLLCLVDFV
RSVMAWDHLREEEHMLLETLMANVPQSRTVKSNSLELTPSNTPQLSPATTPANKKNRNLG
QQLATSWDSTTTTLSAHIPLVTPFAASRSRSRTELAQQGEAEASSLESLQEVMPEEVLVI
SLGSSPQTIPGMMSENEVLTMQQTDGAQGFTPADDTKHHCKPDKTLRFSLCSDNLEGISE
GPSNRSNSVSSLDLEGESVSELGAGPSGSNGVEALQLLEHEHATTQDNLDDKLRKFEIRD
MMGLTDDRDISETVSETWSTDVLGSDFDPNMDEDRLQEIAGAAVENMLGSLLCLPGSGSV
LLDPYGSTISETTSEAWSVEVLPSDSEAPDLKQEERLQELESCSGVGSTSDDTEVREVSS
RPSTPGLSVVSATSEDIPNKTEDLRSECSSDFGGKDSVTSPDGEESSHGAHHSLASPPSQ
ADSLLAMFDPLSSGEDSSTGTIVRPKVHCARPLHPPPDPPIPEACALGQEPRHSLFTPHC
LAQAELEHTKQRHSFPDRLVRSRSSDIVCPGRRPTSDPGLNRRAAAEERDPAGAFFMGPF
SSPSKDSLKGEVEERKDSDEEKSDRNRPWWKKRFQSAIPKVLYWTAESEVPAPIAAFRKR
DKQEKDDMGHERVLQDDPMSRTSQAQAAEDILDKYRNIKRTSPSEGATAAVYDATELFGE
ECVHDSPRDEALQNMSTDDLPDSASQTAQQHHSFKFSFSDAKKKLRLALCSAESVAFPLM
APATTRNGLPDHTDSEDNEIVCFLKVQLAEAIILQDKNQMAQIQETTRCVSRFDARTCRK
LLAAIVEDYRKRAPYIAYLTRCRQGLQTSHAHLERLLQRVLRDKEVANRYFTTVCVRLLL
EHMEAKSLDFIKAFQGCTASDDKTAAVEDFLRYLYGAMAHDAIWQYASEDQLQDAQMAIE
RSVMNRIFKLAFYPNQDGDILRDQLLQDHIVRLSKVVTSNHKALQIPEVYAREAPWPSAQ
SEIRTISAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIKANPPCL
LSTIQYINNFYASRLSGEECYWWMQFTAAVEFIKTIDDRK
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagccagacatccacactctggcccatcacctgaagcaggagcggctgtatgtg
gcctcagagaagcagctgatccagcggctcaatggggacgtgctgaagactgctgagagg
ctgtaccgtgctgcctggatcaccaagcagcagaggatcaaccttgaccgtctcatcctc
accagtgctgaggcttccccggccgaatgctgccaacatgccaaagtgctggaggacaca
cagttcctggacggctacaagactctgggcttccaggagagcatctatggggagttcctt
ggccgggtgcgggagaatccacggctggtggcctcctgcctggtggctggggagaggctg
aaccaggagcacacacagggggtcatttacactgtctttacctcactctacggcaactgt
atcatgcaggacgatgagagctacctgctgcaggtcctccgctacttggtggagtttgag
ctgaaggagagcgacaaccctcggaggctgctgcgtcgaggcacgtgcgccttcagcatc
ctcttcaagctcttctctgaggggctgtactcagccaagctcttcctcactgccaccctc
cacgagcccatcatgcagctgctggtggaggacgaggaccacctggagacggacccctcc
aaggtgactgagcgcttcacgccggcccagcaggagcgcctgtttggggagaagggctca
gagggctacaggcagaaggtggcggctgctgtggaggccaacgaggccaagctggtgacc
ctggtcaacaagttcatcggctacctgaagcagaacacctactgcttcccccacaacctg
cgctggattgtgtctcagatgtacaagacgctgtcgtgcgtggagaggctggaggtgggt
gaggtgcggaccatgtgcacagacctgctgctcacctgcttcatctgcccagccatagtc
aaccctgagcagtatggcataatctcagatgcccctatcaacgaggtggcccgcttcaac
ctcatgcaggtagggcagcttcttcaacagttggcaatggctgacgatgatggagacccc
aggaggaaaaacagtttggccaagttcgataagagctgcgtagctgccttcctggatgtg
gtaatcggagggagagctgtggagacaccgcccatgtcctccatgaacctacttgaaggc
cttagcaggactgtggcgtacatgacacacagtcagctgctctgcctggtggactttgta
cggagtgtgatggcatgggaccacctccgggaggaggagcacatgctcctggagacccta
atggccaatgtgccccagtcccgcacggtgaagagcaacagtctggagctcaccccctcc
aacaccccccagctctccccagccaccacccccgccaacaagaagaacaggaacttagga
caacagttagcaacgtcctgggactccacaaccacaaccctgtctgctcacattccatta
gttaccccttttgcagcctcccgcagtcgcagccgtactgagctggcccagcagggggag
gcagaggccagctctttggagtctctgcaggaggtgatgccagaagaggtgctggtgatc
tcgctaggaagcagcccgcagaccatccccggcatgatgtcagaaaatgaggtgttgacc
atgcagcagactgatggggcacaagggttcactcctgcagatgacaccaagcaccattgc
aaaccagacaaaaccctgcgtttctccctctgcagtgacaacctggagggtatctcagag
ggtccgtccaaccggtctaactctgtgtcgtcactggacctggagggagagtctgtgtca
gagctgggagctgggccatcaggaagcaatggggtggaggctctacaactgctggagcat
gaacatgccaccactcaggacaacctggatgacaaactgaggaagtttgagatccgagac
atgatgggcctgacagatgaccgggacatctctgagactgtgagtgagacctggagcaca
gacgtgctgggcagcgactttgaccccaacatggacgaagatagactgcaggaaatagct
ggggcggctgtagagaacatgctgggcagcctgctgtgtctaccaggctccggctcagtg
ctgctagacccctatggatccaccatctcagagaccaccagcgaggcctggagtgtggag
gtcctgcccagcgactcagaagccccagacctgaagcaggaggaacgtctacaggagcta
gagagctgctcaggggtgggcagcacctccgatgacacagaggtcagagaggtcagctcc
cggcccagcaccccagggctcagcgtcgtctcagcgacatcagaagacatccccaacaaa
acagaagacctgcggtcggagtgcagctcagactttggggggaaggactctgtgaccagt
ccagatggggaggagtcgtcccacggagcacatcacagtttggcctctcctccctctcag
gcagactccttactggccatgttcgatcccctctcctccggcgaagattcctccactggt
accatcgtgaggcccaaggtgcactgcgccaggcccctccatcctccccctgaccctccc
atcccagaggcctgtgccctgggccaagagccccgccactccctgttcacgccccactgc
ctggcccaagccgagctggagcacaccaagcagcgccactccttcccagacaggctggta
cgcagccgcagctctgacattgtgtgcccaggacgtcggcccaccagcgacccgggcctc
aaccgcagggctgcagccgaggagcgggaccctgccggggccttctttatggggccgttc
tcgtctcctagcaaggactccctgaaaggagaggttgaggagagaaaggacagtgatgag
gaaaagtctgatcgcaacagaccgtggtggaagaaacgctttcagtcagccattcccaaa
gtgctgtattggacggctgagagtgaagtcccagctccgatagcagccttccggaaaagg
gacaagcaggagaaagacgatatgggccatgaacgtgtcctacaagacgaccctatgtcc
aggacctcccaggcccaggcagcagaagacatccttgacaagtacaggaatatcaagagg
accagtcccagtgaaggagccactgctgcagtctacgacgccacagagttgtttggagag
gagtgtgtgcatgactcccccagagacgaagctctgcagaacatgtccacagacgacctg
ccagactcagccagccagacggcccagcaacaccactccttcaagttctcattcagtgat
gcaaagaagaagttgagactggccttgtgttcagcagagtctgtggccttccccctcatg
gctcctgccaccacacgcaatgggctgcctgaccacacagactctgaagacaacgagatc
gtgtgcttcctgaaggtccagctggcggaggccatcattctgcaggacaagaaccagatg
gcccagatccaggagaccacacgctgcgtcagccgcttcgacgcacgcacctgcaggaag
ctgctggcagccattgttgaggattacaggaaacgggcaccctacattgcgtatctgact
cggtgtcggcaaggcctgcagacatcccatgcccacctggagaggctgctgcagagggtg
ctgagggacaaggaggtggctaaccgatacttcaccacagtctgtgttcgcctcctactg
gaacacatggaggctaagtcgttggacttcatcaaagccttccaggggtgcacagcgtca
gacgacaagactgcggcggttgaggacttcctgcgctacctatacggggccatggcccat
gatgccatctggcagtacgccagtgaggatcagctgcaggatgcccagatggccatcgag
cgcagcgtcatgaaccgcatcttcaagctggccttttaccccaaccaggacggggacatt
ctgagagaccagcttcttcaggaccacatagtgcgtctctcaaaagtggtgacatcaaat
cacaaagctcttcaaatcccagaggtgtatgcgagggaggctccctggccatctgcccag
tcagagatccggaccatcagtgcctacaagacccctcgggacaaagtgcagtgtatttta
cgcatgtgttccaccatcatgaacctcctgagtctggccaatgaggactctgtccccgga
gctgatgattttgtccctgtgctcgtctttgtcctgataaaggcaaacccgccttgcctg
ctgtccacgattcagtacatcaataatttctatgccagccggctgagtggggaggagtgc
tattggtggatgcagttcaccgcggcagtggaattcattaagaccatcgacgatcgcaag
tga
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