Coregonus clupeaformis (lake whitefish): 121584796
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Entry
121584796 CDS
T08357
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121584796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121584796
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121584796
Spliceosome [BR:
cclu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121584796
Complex C
U5 SnRNP specific factors
121584796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Motif
Other DBs
NCBI-GeneID:
121584796
NCBI-ProteinID:
XP_041756861
LinkDB
All DBs
Position
16:complement(36717296..36734254)
Genome browser
AA seq
2137 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLVGTKMGDKSQRTK
PSMLEERRAKRRKRDEDRHDMNKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDDGSDEESEGEEADLGCTL
TANLGVTGDVMTAKKKELHPRDIDAFWLQRQLSRFYDDAIISQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMEADPDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGESMTPKQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVTIEKLPKYAQAGFEGFKTL
NRIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMNLIHTAA
NVLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVASDHWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
QNKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITP
MEALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVTDGTLKETLANGVGYLH
EGLSTTERRIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVIMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCTDKGVES
IFDIMEMEDEDRSGLLQLSDTQIADVARFCNRYPNIELSYEVAEKENIKSGGPVLVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGV
HNYTLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcacgtagcttgcagtatgagtacaaagcgaactccaacttggtc
ttacaagcagaccgttcgctcattgaccgcacaaggcgtgatgagcccacaggagaggtg
ctgtccctggtggggaagttggtgggaaccaagatgggtgacaagtcccagaggaccaaa
ccttcaatgctggaggagagacgggcaaagaggagaaagagagatgaggacaggcacgac
atgaacaagatgaagggcttcaccctcctgtcagagggcattgatgagatggtgggcatt
gtgtacaagcctaagaccaaggagaccagggagacctacgaggtccttctcagcttcatc
caggctgccctgggagatcagccgagagatatcctgtgtggagcggctgacgaggtgctg
gctgtactgaagaatgacaagatgagggacaaggagagacggcgtgaagtggagcagtta
ctagggcctgcagatgacacacgctaccacgtgctggtcaatctgggcaagaagatcagt
gactacgggggtgacaaagagctccagaacatggatgacaacattgacgaaacatacgga
gtgaatgtccagtttgaatctgatgaggaggagggtgatgaggaccagtttggggaggtg
cgagatgacggctcagatgaagagagtgaaggagaggaagcagacttgggctgcactctg
acagccaatcttggtgtgacaggtgatgtgatgacagccaagaagaaggagctgcatcct
cgtgacatcgatgccttctggctccagcgtcagctcagccgtttctacgacgatgccata
atatctcagaagaaagcagatgaggttctggagatcctcaagactgccagtgatgacaga
gaatgtgagaatcaactggtcttactgttgggattcaacacctttgacttcatcaaaatc
cttcgtcagcatcgtcgcatgatccagtactgtaccatgttggcaagtgctcagagcgaa
gcagagaaggagaagatcataggaaagatggaggcagatccagacttgtccaaagttctt
tatcagctgcaggagactgagaaggaggatattattagggaagagcgatctcgcagggag
agagtgaggaagtctcgcgtggacaatgacttggagtctatggacatcgaccatggagag
tccatgacccctaaacagctgctggacctggaggacctggccttcacccagggaagccac
ttcatggccaacaagaggtgccagctgccagatggctccttccgcaagcagcgcaaaggc
tacgaggaggtgcacgttcctgcactcaagcccaagcccttcgctgacgatgaggtgctg
gtgacaatcgagaagctgcccaagtatgcccaggcaggtttcgaagggttcaaaaccctg
aaccgcattcagagcaagctgttcaagactgctatggagaccgatgagaacctgctggtg
tgcgctcctacgggagcaggtaagaccaacgtggccctcatggctatgctaagggagatc
ggcaagcacatcaacctggatggaaccatcaacttggacgacttcaagatcatctatgtg
gctcctatgcgctcgctggtacaggagatggtgggcagctttagtaagcgtctggccagt
tatggcatcacagtgtctgaactgacaggagaccatcagctgtgtaaagaggagataaac
gccacccaggtcatcgtctgcaccccagagaaatgggacatcatcacacgcaaaggaggc
gagcgcacctacacccagctagtgcgcctcatcatcattgatgagatccatctgctgcat
gacgaccgtgggccagtcctggagtctctggtggccaggaccatccgcaacgtggagctg
acccaggaggacgtgcgtctgctgggtctcagtgccaccctgcccaactacgaggacgtg
gccacctgcctgcgagtagaccccgccaagggactcttctacttcgacaacagtttccgt
ccagtgcccctggagcagacatatgtgggcatcactgagaagaaggccatcaagcgcttc
cagatcatgaatgagattgtctatgagaagatcatggagcatgctgggaagaaccaggtg
ctggtgtttgtccactccaggaaggagaccgggaagactgcccgggccatcagggacatg
tgtctagagaaagacaccctggggctgttcctgagggagggctcagcctcaactgaggtc
ctcaggactgaggcagagcagtgcaagaaccttgagctgaaggacttgctgccctacggt
ttcgccatccatcatgctggtatgaccagagtggaccgtaccttggtggaagatctcttt
gctgatcgccacatccaggtgctggtgtccacagccacattggcctggggtgtgaatctg
cctgcacatactgtcatcatcaaaggcacccaggtgtacagcccagaaaaaggcagatgg
acagagctgggagccctggacattctacagatgcttggtcgagctgggcgtcctcagtac
gacaccaagggagagggcatcctgatcacatcccacggggagctgcagtactacctgtct
ctgctcaaccagcagctgcccatcgagagccagatggtgtccaagctgccagacatgctc
aacgctgagatagtgctgggcaacgtgcagaatgctaaggacgcagtgaactggctgggc
tacacctacctgtacgtgcgtatgctccgtaaccccaccctgtacggggtctcccatgac
gaccgcagctcagaccccctgctggagcgccgcaggatgaacctgatccacactgcagcc
aacgtgctggacaagaacagcctggtcaagtacgacaagcggactggcgccttccaggtg
acggacctgggtcgcatcgccagtcacttctacatcacccatgactccatccagacgtac
aaccagctgctgaagcccaccctcagtgagatcgagcttttccgcgtcttctccctctcc
tctgagtttaggaacatcactgtcagagaggaagagaagctggagctgcagaagctgctg
gagagagttcccattccagtgaaggagagcattgaggagcccagcgccaagatcaacgtg
ctgctccaggcttacatctctcagctcaaactggagggctttgctctgatggctgacatg
gtctatgtgacgcagagtgctggaagactgatgcgagccatctttgagattgtcctgagc
aggggatgggcccagctcacagacaagaccatgaacctctgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgtcagttcaggaagctcccagaggaagtcatcaag
aagattgagaagaagaacttccccttcgagcgcctctatgacctcaaccacaatgagatt
ggtgagttgatccgcatgcccaagatggggaagaccatccataagtacgtgcaccagttc
cccaaactggacctggccgttcacctgcagcccatcacccgctccacactgaaggtggag
ctcaccatcacaccagacttccagtgggatgacaaggtgcatggctcatcggaggccttc
tggatcctggtggaggatgtggacagtgaggtcatcctacaccacgagtacttcctgctc
aaggccaagtacgcccaggacgagcacctggtcaccttcttcgtgcccgtgttcgagccc
ctgcccccgcagtatttcatccgcgtggcctcggaccactggctgtcctgtgagacccag
ctgccggtgtctttccgccacctgatcctgccagagaagtacccccctcccactgagctg
ctggacctgcagcccctgcctgtgaccgcccttcgtaatgccgccttcgagaccctctac
cagaacaagtttcccttcttcaaccccatccagacacaggtgttcaacgctgtgtacaac
agtgacgacaacgtgtttgtgggagcccccaccggcagtgggaagaccatctgtgctgaa
tttgccatcctgaggatgctgctgcacaacgcagagggacgttgtgtctacatcacaccc
atggaggccctggctgaacaggtgtttgttgactggcaccagaagttccaggatgctctg
aataagaaggtggtgttgctgacgggagagactagcactgacctgaagctgctggggaag
ggtgacatcattgtcagcaccccggacaaatgggacatcctgtcgcgccgctggaagcag
aggaagaacgtccagaacgtcagcctcttcatcgtggacgagactcacctcattggagga
gagaacggacctgtgttggaagtgatctgctccaggatgaggtacatctcgtctcagatt
gagcgtcccatccgcatcgtggccctcagctcctccctgtccaatgccaaagacgtggcc
cactggctgggatgcagcaccactgcaacctttaacttccaccccaatgtcaggcctgtc
cctctggagctgcacatccagggcttcaatgtgagtcacacccagactcgcttgctgtcc
atggccaagccagtgtaccacgccatcatgaagcactccccctctaaaccggctgtcgtg
ttcgtcccgtcccgccgtcagacccgcctcaccgccatcgacatcctcaccttctgtgct
gctgacgtggtccctcagaggttcctgcactgcactgagaaggacctggctcccttcctg
gagaaggtgacagacggcaccctgaaggagacgctggccaatggggtgggctacctgcac
gagggcctgtcaactacagaacgcaggatcgtggagcagctattcaactccggtgcagtc
caggttgtagtggcttcacgctccctctgctggggcacaaacatatctgctcacctggtt
gttatcatggacacccagtactacaatggcaaaatccatgcctatgtggactaccctatc
tacgatgtgctccagatggtgggcaaggccaaccggcccctgcaggacgatgagggacgc
tgtgtcatcatgtgtcagggttccaaaaaggatttcttcaagaagtttctgtatgagccc
ctgccagtggaatctcacctggaccactgcatgcacgaccacttcaacgctgagatcgtc
accaagacggtggaaaacaaacaggacgcggtggactacctgacctggaccttcctgtac
cgtcgcatgacccagaaccccaactactacaacctgcaaggcatgtctcaccgtcatctg
tccgaccacctgtcagaactggtagagaacaccctgcatgacctggagcagtccaagtgc
atcagcatcgaggatgagatggatgtggcacctcttaacttgggcatgatcgctgcctac
tactatatcaactacaccaccatcgagttgttcagtatgtccctgaacgccaagaccaag
atccgtggattgattgagatcatctccaatgctgctgagtacaagaacatccccatcaga
caccatgaggacaacctgctcagacagctggcccagaaggtgccccacaaactgaacaac
cccaagttcaacgatccccatgtgaagaccaacctgctgctgcaggctcacttgtccagg
atgcagctgagcgctgagctccagtcagacacagaggagatcctcagcaaggctgtgcgt
ctgatccaggcctgtgtagatgtgctgtccagtaacggctggctgagccctgcactggct
gctatggagctggctcagatggtcacccaggccatgtggtccaaggactcctacctcaaa
cagctgccctactttacctctgagcacatcaaacgctgcacggacaagggtgtggagagt
atctttgacatcatggagatggaggatgaggatcgtagtgggctgctgcagctctcagac
acccagatagcagacgtggctcgcttctgtaaccgctaccccaacattgaactgtcctac
gaggtggcagagaaggagaacatcaagagtggaggtccagtgctggtcctggtccagttg
gagagagaagaggaggtgactgggcctgttattgccccactcttcccccagaaacgtgag
gagggctggtgggtggtgattggagaccccaagtccaacagcctgatctccattaagagg
ctgacactgcagcagaaggccaaggtgaagctggactttgttgcaccagtgctgggcgtt
cacaactacacactgtacttcatgagtgatgcctacatgggctgtgatcaggagtataaa
ttcagcgtggatgtgaaggaggcagacagcgatggagacagtgattcagactag
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integrated database retrieval system
