Coregonus clupeaformis (lake whitefish): 121584804
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Entry
121584804 CDS
T08357
Name
(RefSeq) serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
cclu04261
Adrenergic signaling in cardiomyocytes
cclu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121584804
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121584804
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121584804
03036 Chromosome and associated proteins [BR:
cclu03036
]
121584804
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
121584804
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
121584804
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
121584804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
121584804
NCBI-ProteinID:
XP_041756871
LinkDB
All DBs
Position
16:36519934..36535215
Genome browser
AA seq
447 aa
AA seq
DB search
MAGAGGGGNDVQWCFSQVKGAIDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEL
ESKNQPQCSGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI
KLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFQPMDLMVEASPRRVFSNAHTYH
INSISVNSDCETYLSADDLRINLWNLEITDRSFNIVDIKPANMEELTEVITAAEFHPNQC
NTFVYSSSKGTIRLCDMRASALCDQHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY
MMTRDYLSVKIWDLNMESRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGNDSVVMT
GSYNNFFRMFDRGYRQDVTLEASRESSKPRSVLKPRKVCTGGKRKKDEISVDSLDFNKKI
LHTAWHPQDNIIAVATTNNLYIFQDKL
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagctggcggcggaggcaatgatgtgcagtggtgcttttctcaagtcaaagga
gcgattgatgacgatgtggctgaagctgacatcatatccactgtggaattcaatcactct
ggggagctactagccactggggacaaggggggccgcgttgtcatctttcagcaggagcta
gagagcaagaaccagccacaatgcagtggagagtacaatgtttacagcaccttccagagc
cacgagcctgagttcgactacctgaagagccttgagattgaggagaagatcaacaagatc
cggtggctgcctcagaagaacgctgcacagttcctcttgtccacaaatgataaaactata
aagctgtggaaaatcagtgaacgggacaagcgaccagaggggtacaacctgaaggaagag
gatgggcgctacagagaccccactaccgtcacaacactacgggtcccagtgtttcagccc
atggacctgatggtggaggccagccccaggcgagtgttttctaacgcacacacctaccac
atcaactccatctcagtcaacagcgactgtgagacctacctgtctgccgatgaccttcgc
atcaacctctggaacctggagatcactgaccgcagctttaacattgtggacatcaagcca
gccaacatggaggagctgacagaggtgattacagcagcagagttccatcctaaccagtgc
aacacctttgtctacagcagcagcaagggcaccatccgcctctgtgacatgagagcatca
gctctctgtgaccagcactccaaactgtttgaagagcctgaggatccaagcaaccgctca
ttcttctctgagattatctcctccatctctgatgtcaagttcagccacagtgggcgctac
atgatgacccgggactacctatccgtcaaaatctgggacctcaacatggagtcccgtcca
gtagagacttatcaggttcatgaatacctcaggagtaaactgtgctcactctatgagaac
gactgcatctttgataagtttgagtgctgctggaatggaaacgacagtgttgtgatgacg
ggctcgtacaacaacttcttcaggatgtttgaccgaggctaccggcaggatgtgaccctg
gaggcgtctcgggagagcagtaagcctcgctctgtgctcaagccccgcaaggtgtgcaca
ggtgggaagcgcaagaaggacgagatcagtgtagacagcctggactttaacaagaagatc
ctccacacggcctggcaccctcaggacaacatcatcgcagtggccaccactaacaacctc
tatatatttcaggacaaactgtaa
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