Coregonus clupeaformis (lake whitefish): 121584928
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Entry
121584928 CDS
T08357
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121584928
09122 Translation
03013 Nucleocytoplasmic transport
121584928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121584928
03041 Spliceosome [BR:
cclu03041
]
121584928
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121584928
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121584928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
121584928
NCBI-ProteinID:
XP_041757122
LinkDB
All DBs
Position
16:complement(30518244..30536677)
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AA seq
683 aa
AA seq
DB search
MSDALKKRKSKVLRSETGTPEGKCGRGEGDQDVRVYSEEVELDGRNPEEDYQQYKLTCEA
LAKLMNDIQELKANGAKDGCAEVEEKRMQSCIHFMSLKKLNRLAHMRLKRGRDHTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSVDEFYQEAPPEISRTLLTKD
DPHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQEYLSMPFEQTQRQTEIARHLPPSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLKCKDGSV
LHLFFYYLMNLNIMTVKAKVSTTTDLTGAISAGELLNSDTLLNCLYANDQGRETPNPANR
YQFDKVGISSFGDYVAELGHPYLWVQSLGGLQFPSDAPEGLRAGSSLSASHMESTMKLLR
GRVQSRLALHKQFSSLEHSIVPVSSECQHLFPAKVLSRLARWTTMSHQEYTNLSFTQHVS
EAGLARETDLFFMAVVERGTARLQAAVVLNPRYSEISPLFALSLSWKGECSGRTDDNLRA
MESEVNVFKSELQGPRPGHQLLTNQVARLCVCLDVYLETDGQDDSVEGPQEFLREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgccctgaagaagcgcaagtcgaaggtgctccgcagcgagacaggcacaccg
gaggggaaatgcggccgcggagagggggaccaggacgtgcgtgtgtacagtgaggaagtg
gagctggatggcaggaaccctgaagaggactaccagcagtataaactgacctgtgaagct
ctggccaaactgatgaacgacatccaggagctgaaagccaacggagccaaggatgggtgt
gctgaggtagaggagaagaggatgcagagctgtatccactttatgagcctgaagaaactc
aaccgcctcgctcacatgagactgaagagggggagagaccatacacacgagggcaagcag
agagtggatgtgttgcacttgcagctccagaacctgctctatgaggtcatgcacctgcag
aaggagatcagcaagtgtctggagttcaagtctaaacatgaggagatagatctggtgagt
gtagatgagttctaccaggaggccccccctgagatctcccgcaccctcctcaccaaggat
gacccccaccaactcacactggccaggttggactgggaactggaacagaggaagaggttg
gctgagcagtacaaggagtctctgtccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctatcatgcaggcatccctc
ccggtccaggagtacctctccatgccgtttgaacagacccagagacagacagagatcgcc
cgccacctcccaccctctctctacgtcctactggttcaggccagcgcttacggacaggcc
tgcgataaaagcctgagtgtgtccatcagtggagatgtggacgaggccaaagctctgtct
aaacctccagaggactcgcaggatgatgattctggtgattctgatgcagaggaggagcaa
gagaaaacgaagaggaggagacctactacaggtggtcagctggatgataagagacgtgag
atgctgaagagacaccctctctccctttgcctggacctcaaatgcaaagacggcagtgtg
ctgcatctgttcttctactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccaccaccacagacctcactggagccatcagcgcaggggagctgttaaactctgacacg
ctgctcaactgcctgtatgccaacgaccagggccgcgagacacccaaccccgctaaccgc
taccagtttgataaagtggggatcagttcgtttggagactacgtggcagagttgggtcat
ccctacctgtgggtgcagagtctaggaggactgcagttccccagtgatgccccagagggt
ttgcgtgcgggcagttctctgagtgccagtcacatggagagcactatgaagctgttgaga
ggacgagtccagtcacgcctggccctgcacaaacagttctcctcactagagcacagtata
gttccagtgtccagtgagtgccagcacctgttccctgctaaggttctctcccgcctggct
cgctggactaccatgtcacaccaggagtacacaaatctgtcgttcacgcagcatgtgtca
gaagcaggtctggctcgggagactgacctgttcttcatggctgtggtggagcgaggaaca
gctcgtcttcaggctgcagtggtgttgaacccccgttactcagaaatctctcctctgttt
gctctttcactcagctggaagggcgaatgcagcggacgtacagatgacaaccttagagcc
atggagagtgaggtgaatgtgtttaagtcggagctccaggggccccgcccagggcaccag
ctgctgaccaatcaggtagctcgtctgtgtgtctgtctggacgtatacctggagactgat
ggacaggatgacagtgtggagggaccacaggagtttctcagagagaagatgtgtctacgc
accgtaaggggtccgaaccgtctgaagccgttcaagtataaccacccccagggcttcttc
agtcaccgctga
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