Coregonus clupeaformis (lake whitefish): 121585032
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Entry
121585032 CDS
T08357
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1 isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
121585032
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121585032
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
121585032
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans_2
Ion_trans
Motif
Other DBs
NCBI-GeneID:
121585032
NCBI-ProteinID:
XP_041757296
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Position
16:complement(48063653..48083992)
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AA seq
1070 aa
AA seq
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MAMKIPHTYPPISHTHCRYRGHRLWWAFLLSSLSVFLGGLLALLLWKVAHSGFNSIGIFR
PRRQRWAHRQSISVEPEFNLKNALKEWAFSVISAQHLPGKVLMVLIFCFNIGSILTYIIL
STDPVESCMKEYSIAFLVDLSFNICHLMYFGLRFLAAQDKLTVWVDLRSLVDFFTITPSF
VTLFSRRAWLGLRFIRAMHILELPVVLQILNILNSNSTTLKLSRLVAILTGTLLTSAGFI
HLLENSGDPWLDFSNPQPLYYFDCVYFLVVTMSTVGYGDVEIRTTLGRLFVIIFIFIGLG
LFANFVPEVVQIIINRKRFDGSFTAVSGKTHVVVCGHITLSSASAFMKDFLHEDRGEVNV
KVLFLGNFRPDQELEAFFLRWFLKVTFYQGSVMQKRDLERVRMQKAGACLIICDRFTSDQ
NKEDAANLMRVISIKQYCPNTRIIVQMLKHNSKAFLQNVPNWDWSRGDAVICLAELKLGF
MSQSCLVPGLSTLLANLFTMQSEIEQDGDTWQNLYREGLYNEIYTEHLSPSFIGMSFAQA
SKLCFLKLRLLLIGIEYQSGDQDFNVLVNPPSHIKIKLWTLGFLIASNASDARRASMYCS
VCHRDIKDLSRMGPCKCTEQKDVSSHTSTMSLGFRRPSLGVLPFSPEGETLGERECVWEE
QEEEEVGLDSTGLFHWCPPVPLKDISLTRQSASTLALQDHVVVCVFGDGGSSLLGLGDFM
MPLRASSLTAPELRTVVFLGDPHYFSREWPNIQYFPNIYFLPGSPLCGADLRVLRVERCA
MVVVLSSLSSSSDIEPSMQDKDTIHFCVNLYHIRFSPEPGPRCTLSHTQSHGHGQGLELG
HGFGGHNRGPSHDTLDFSHIPMIPEKAEVTPAHSAGSAVPLLVELVNSSNVCFVNEADSQ
EDFSSLTLTQGFSVGSVFSVDLLDTLMSATYFNANVPGLICTLVTGGDTPLLEAQLAEDN
QLQGGEMSVKMWALRQRSKLAQLALQDEPLCSLACEDFKELFCQALDSLEILCFGLYRLL
DPPNPSMKRFVITNPSAELPLLPSDRVFCSVPFHQSHLLTLRRAKTSHRL
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggccatgaagatcccccacacttaccctcctatctcccacacccactgccgctaccgg
gggcacaggctgtggtgggccttcctcctctcctccctgtctgtcttcctggggggcctg
ctggccctgctgctctggaaggttgctcacagcgggttcaatagtattgggattttcaga
ccccgacgacagcgctgggcacacagacagagcattagtgtggagccagagttcaatctg
aagaatgccttgaaggaatgggctttctctgtgatatctgctcaacatctgcctggcaaa
gtcctgatggtgctgatattctgtttcaacatcggctccatcctgacctatatcatcctc
tctactgacccagtagagtcctgcatgaaagaatacagcatagctttcctcgttgatttg
agcttcaacatctgccaccttatgtattttggactccggtttttggcggcccaggataag
ctgacggtttgggttgacttgagatccctggtggattttttcaccatcactccttccttt
gttaccctgttttcccgtcgagcctggctgggtctgagattcatcagagctatgcacata
ctggagttaccagtcgttctgcagattctcaacatcctcaacagcaacagcaccactctg
aaactctcccgcctggttgctatcctaacaggcacactgctgacctctgctggtttcatc
cacctgctggagaactcaggtgacccctggctggacttctccaacccccaacctctctac
tactttgactgtgtttacttcctggttgttaccatgtcaacggtgggctatggggatgtg
gagataaggacgaccctgggacgcctctttgtcatcatcttcatctttatcggactgggt
ctgtttgccaactttgtcccagaggtggttcagatcatcatcaacaggaagaggtttgat
ggaagcttcacggctgtctcaggcaagacccatgtggtggtgtgtggtcatatcactctg
agcagtgcctctgcctttatgaaagattttctacatgaggacaggggagaggtcaacgtc
aaggtgctcttcctgggaaacttccgtcctgaccaggagctggaggcgttcttcctgagg
tggttcctgaaggtcaccttctatcagggctcagtgatgcagaagagagacctggagaga
gttaggatgcagaaagcaggagcttgcctgatcatctgtgacaggttcacctcagaccag
aacaaggaggacgctgccaatctcatgagggtgatctccatcaaacagtattgtcccaac
accaggattatagttcagatgctgaagcacaatagtaaggcgttcctgcagaacgtgcct
aactgggactggagtcgaggtgatgcagtgatctgcctggcagagctcaaactgggtttc
atgtctcagagctgcctggtgcctggcctctccacactattggccaacctgttcaccatg
cagagcgagatcgagcaggatggagacacctggcagaacctgtacagagagggcctctac
aatgagatctacacagagcacctgtccccctccttcatagggatgtccttcgctcaggcc
agcaagctatgtttcctgaagctgaggttgctgttgattgggattgagtatcagagcgga
gaccaagatttcaatgtgttggtgaatcctcccagtcacatcaaaatcaagctgtggact
ctgggtttcctcatagccagcaatgccagtgatgccagaagggcgagtatgtactgctct
gtgtgtcacagagacatcaaggatttgtccaggatgggaccctgcaagtgcactgagcag
aaagatgtctcatctcacacctccactatgagtctaggcttcagacggccatcactggga
gttctgcccttcagcccagagggagagactcttggagagagggagtgtgtttgggaggag
caggaggaggaggaggtggggctggactctacaggactgttccactggtgcccacctgtt
cccttgaaggacatctcactgaccagacagagtgccagtactctggcgctgcaggaccat
gtggtggtgtgtgtgtttggggacgggggctccagcctgctgggcctgggggacttcatg
atgcctctgagggccagcagcctgacggccccagagctgaggacagtggtcttcctggga
gacccacactacttcagcagggagtggcccaacatacaatacttccccaacatctacttc
ctgcctggctctcctctgtgtggggcagacctacgtgtgttgagggtggagcgctgtgcc
atggtggtggtcctcagctctctgtccagctccagcgacattgagccctccatgcaggat
aaggataccatccacttctgtgtcaacctctaccacatccgcttcagccccgagccaggc
ccacgctgcacactcagtcacactcagagtcacggccatggacaggggctagagcttggt
catgggtttggtggtcataaccgcggtccaagccatgacacactagacttttcccacatc
cctatgatacccgagaaggctgaggtcacccctgctcacagcgctggctccgctgtccct
ctgctggtagagctggtgaacagctctaatgtgtgctttgtgaacgaggcggacagccaa
gaggacttctccagcctgactctgacccagggcttctctgtaggttccgtcttctctgtc
gacctgctggacactctcatgtcagccacgtacttcaacgccaatgtgcctggtctgatc
tgtacgctggtgacgggtggcgacacccctttactggaggcccagctggcagaggacaac
cagctgcagggaggggagatgtccgtgaagatgtgggcgctgcgccaacgctccaaactg
gcacagctggcactgcaggacgagcccctctgtagcctcgcttgtgaggacttcaaggag
ttgttctgccaggctctggactcgttggagatcctgtgttttgggctgtatcgcctgctg
gaccctcctaacccctccatgaagaggtttgtaatcaccaacccgtcagcagagctcccg
ttgttgccctcagacagagtcttctgctccgtacccttccaccagagtcacctgctcacc
ctgaggagagccaagaccagtcaccgcctatga
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