KEGG   Coregonus clupeaformis (lake whitefish): 121585147
Entry
121585147         CDS       T08357                                 
Name
(RefSeq) THO complex subunit 4 isoform X1
  KO
K12881  THO complex subunit 4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013  Nucleocytoplasmic transport
cclu03015  mRNA surveillance pathway
cclu03040  Spliceosome
cclu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121585147
  09122 Translation
   03013 Nucleocytoplasmic transport
    121585147
   03015 mRNA surveillance pathway
    121585147
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    121585147
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121585147
   03041 Spliceosome [BR:cclu03041]
    121585147
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     121585147
    TREX complex
     121585147
Spliceosome [BR:cclu03041]
 Complex C
  Other components
   EJC/TREX
    121585147
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    121585147
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 121585147
NCBI-ProteinID: XP_041757453
LinkDB
Position
7:complement(9350926..9354196)
AA seq 264 aa
MADKMDMSLDDIIKQNRQQRGGAGGRGGGRGRGRGGSGGGRGGGVGRGAAGGGFGGRGGG
SGPMRNRPNLSRGRARPTPYSRPKQLPDKWQHDMYGNHGFNASAGGGAGVETGGKLLVSN
LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD
GRPMNIQLVTSQIDTQRRPPMQGMNRGGGMNRGRGGVFRGMQRGRGAGRGGGRGRGGRGG
STKPLSAEELDAQLDAYNARMETS
NT seq 795 nt   +upstreamnt  +downstreamnt
atggccgataagatggatatgtctctagacgacatcatcaagcagaacaggcagcagaga
gggggcgcaggaggccgtggtggtggaagaggccgtggccggggaggctctggcgggggc
cgaggtggtggtgttggccgtggagccgccggtggaggctttggaggccgaggtggagga
tcgggccccatgaggaaccgaccgaacctgagccgtggcagagcaagacctacgccatac
agcaggcctaagcagcttcctgataaatggcaacacgacatgtacggcaatcatggcttc
aatgccagtgctgggggtggcgctggtgtggaaaccggagggaagcttcttgtctccaat
ctcgactttggcgtttcagacgcagatattcaggagctctttgcggagtttggtacactg
aagaaggcagctgttcactacgaccggtcgggcaggagcttaggcacggcagacgtccac
tttgagaggaaggccgatgctctgaaagctatgaaacagtacaacggtgtaccacttgat
gggcgtcccatgaacattcaacttgtcacatcacagatcgacacacaaagacgaccaccc
atgcagggtatgaaccgaggtggtggcatgaacaggggtcgtggtggtgtgttcagaggg
atgcagagaggacgtggagcaggtcgtggaggaggcaggggccgaggtggccgcggggga
agcaccaagccactttccgctgaagagctggatgcccagctagatgcctacaatgccagg
atggaaaccagctaa

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