Coregonus clupeaformis (lake whitefish): 121585224
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Entry
121585224 CDS
T08357
Symbol
scarf2
Name
(RefSeq) scavenger receptor class F member 2 isoform X1
KO
K24319
scavenger receptor class F member 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121585224 (scarf2)
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Laminin domain-containing proteins
Laminin EGF-like domain-containing proteins
121585224 (scarf2)
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_PEAR1L
EGF_Teneurin
EGF_STAB1-2
EGF_2
EGF_C8A_B_C6
JAG1-like_EGF2
Tweety
Motif
Other DBs
NCBI-GeneID:
121585224
NCBI-ProteinID:
XP_041757602
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All DBs
Position
16:complement(56013183..56044564)
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AA seq
978 aa
AA seq
DB search
MELKIIFEVVVVVCSIFSSSFSQELNPKGRNVCKLPGSPGFVCCSGWGQIGEECLTPLCE
GNFTCKEDEVCVRPNECRCRHGYFGASCDTKCPTQFWGPDCKGKCQCFPNGQCDDVTGKC
TCNPNRWGPNCEKPCLCQKGKCDQDTGTCTCQYGFWGPQCANNCYCSLNSVCDQNTGRCN
CSPGWTGRNCAIQCNCNNSPCEQFTGRCQCRERLWGQRCERYCQCIHGKCNQADGSCTCT
PGYRGKFCREPCPAGFYGQNCRNRCGHCKGQQPCKITEGRCVTCERGWNGTKCDQMCLPG
FFGENCLDVCPPCKDGHFCNRIDGKCSHCNPGWIGDRCEVRCPNGTYGDNCENDCSHCFN
GICHIATGECLCEPGFYGTYCNMTCQMGQYGVNCAQTCSCHDKNCNPMSGTCNLEPNQRM
GVIAAGTLVSFLLIVLLSLLCCCCLCRNKDDHNPDQDNSTNSKKAKRILCGRFSRISTKL
PRIPLRRQKLPKVVVAHHDPENTFNCSFIEPPSVVEQPCPSSWSSQESFDSFEEEPSDDG
PVYCVPHEESLNESKEKPAAEKPSAAAAPSEDDAGEYTSLKDTSATNTTTPKPQAGDGSE
APLLKSSDSEGSTSGSESAIGALYARIARLSKNSKDEEDGGGSTVTIEVKGNGKPPSPGG
KATTTTKPRPPDPSTKPKVSWIHGNTGGTTPQVEQLNQGGKGLTVPKERTTRSSSDSSAK
SEERQRLKETSKEKRNQEGKGTEVNGSPSKHKAHRLGRSGEDINHMEHINGVVQNALKKI
GNFHNSNSDKKAAEKAAAVGTPKEPPKSPKVIHPHMNSEAATLLAAQLKEKTQSINRNEG
TGLVKTNGLSTPAFRDRGDREKPTPPQKAKRTTPPTPGHQGSNKPLLPTTTSLQKTVGVG
VPTTDPATPEVAPKSPEKQDLNGSRVGEGGGGGAGDVMPKKTPIKKPPRKKGKDGTLDTT
LETKTPTKTAIMPPQIIK
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaagatcatttttgaagttgttgtggtggtttgttccattttttcatcgagt
tttagccaagaactcaatcccaaaggcaggaatgtatgcaaattgccagggtcaccaggc
tttgtgtgctgcagcgggtgggggcagataggagaggaatgtttgacacctctctgtgaa
ggtaacttcacctgtaaggaagatgaggtgtgcgtcaggcccaacgaatgccgctgtcgc
catggatacttcggagccagttgtgatacaaagtgccccacccagttctggggccccgac
tgcaagggcaagtgccaatgctttcccaacggccagtgtgacgacgtgacgggcaagtgc
acgtgcaaccccaaccgctgggggcccaactgcgagaagccctgcctctgccagaagggc
aaatgtgaccaggacacgggcacatgcacttgccaatatggcttctggggccctcagtgt
gcaaacaactgctactgcagtctcaactctgtgtgtgaccagaacacaggaaggtgtaac
tgtagtccaggctggacggggaggaattgtgccatccagtgtaactgtaataactcgcca
tgtgagcagttcacgggtcgttgccagtgccgggagagactgtggggccagcggtgcgag
agatattgtcagtgtatccatgggaagtgcaaccaggcggacggctcgtgtacctgcaca
ccggggtaccgagggaagttctgcagggaaccgtgtcccgcagggttctacggacagaac
tgcaggaacaggtgtggccactgtaaaggccagcagccctgtaagataacagaggggagg
tgtgtgacctgtgagaggggctggaacgggaccaagtgtgatcagatgtgcctgccaggc
ttcttcggagagaactgcctggacgtgtgtcccccgtgtaaagacggccacttctgcaac
cgcatcgacggaaagtgctctcactgcaaccccggctggatcggggacaggtgtgaagtg
cgctgtcccaacgggacttatggggataactgtgagaatgactgcagccactgttttaac
ggcatttgtcacattgctaccggagagtgcctgtgtgagccgggattttacgggacctac
tgcaatatgacgtgtcagatgggtcagtatggagtgaactgtgcccagacctgctcctgt
cacgacaagaactgcaacccaatgtctgggacctgcaacctagagcccaaccagcggatg
ggcgtgatcgcagcaggaaccctggtctcttttctgctcattgtcctcctctcgctgctt
tgctgctgctgcctctgccgaaataaagatgaccacaatcctgaccaagacaactctacc
aacagcaaaaaagccaagcggatcctatgtggaagattcagccgaatcagcaccaaactc
ccccggatcccactgagacgacagaagctgcccaaagtagtcgtagcccaccacgaccct
gagaacacattcaactgcagcttcatcgagcccccctctgtcgtcgagcagccctgcccc
tcctcctggtcgtcccaggagtctttcgattccttcgaggaggaacccagcgatgatggc
cccgtatactgtgtaccccatgaagagtcgctgaatgagagtaaggagaagccagcagct
gagaagccatctgcagcagctgcccccagtgaggacgatgcaggggagtacacctctctg
aaagacaccagcgctaccaacaccaccacccccaagccccaggctggggacgggagcgaa
gcacccctgctcaagtcctcagacagcgagggctccaccagcggctctgagtcggccatc
ggggccctctacgcccgcattgcacgcctctccaagaactccaaggatgaagaggatggg
ggtggcagcacagttacaatagaggtcaaaggtaacggcaagccaccatccccgggaggg
aaggccactaccaccaccaaaccacgcccgccagacccttccaccaaacccaaggtgtcg
tggattcatgggaacaccgggggtaccacgccccaggtggagcagctgaaccaggggggt
aaggggctgacagtgcccaaggagaggacaaccaggagctccagcgacagctcagccaag
agcgaagagaggcagaggctgaaggagacgtccaaggagaagaggaaccaggaggggaag
gggacggaggtcaatggttcccccagtaaacacaaggcccatcggctgggaaggtccggg
gaggacattaaccacatggagcacataaatggagtggtgcagaacgctctcaagaagatc
ggtaacttccacaactccaactctgacaagaaggcggccgagaaggcagccgctgtggga
acccctaaggaaccgcccaagagccccaaagtgatccacccacacatgaactcagaggcc
gccacactcctggccgcccagctcaaggagaagacgcagagcatcaaccggaatgagggc
actggcctggtaaagaccaacggcctgtccaccccagccttccgggaccgaggagaccgg
gagaagcccactcctccgcagaaggcgaagcggaccactccgcccaccccaggccaccag
ggctccaacaagcctctgctgccaaccaccaccagcctccagaagacggtgggtgtgggg
gtccccacaacggacccagccaccccggaggtcgcccctaagagcccggagaagcaggac
ttgaatggctccagggtgggagagggtggtggtggtggtgcaggggacgtcatgccaaag
aagacccccatcaaaaagcctcccagaaagaaaggcaaggacgggactttggatactact
ctggaaactaagacaccgacaaagacagcaattatgccaccgcagataatcaaatag
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